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Classpath Explorer is an Ant Task that allows you to find dublicate resources within the libraries you are using. It also provides a set of APIs to find archives, and archive locations for the classes you are using. Check Home Page section for info.
JarPlug is a Java Archive editor plugin for Eclipse 3.0. JarPlug adds an archive editing view to your Eclipse perspectives, and allows the individual entries in the archive to be edited or deleted before doing an update. Say goodbye to File Explorer!