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The Community Scheduler Framework (CSF) is a set of Grid Services, implemented using the Globus Toolkit, which provides an environment for the development of metaschedulers that can dispatch jobs to resource managers such as LSF, SGE, PBS and Condor.
DRMAA for Torque/PBS Pro library is an implementation of OGF DRMAA 1.0 (Distributed Resource Management Application API) specification for the submission of jobs to Torque and PBS Professional systems. More: http://apps.man.poznan.pl/trac/pbs-drmaa
Comparative analysis of haploid next-generation genome sequence data
.../absence matrix is also generated to allow you to identify the core/accessory genome content across all your genomes.
The outputs generated by SPANDx can be imported into PLINK for microbial genome-wide association study (mGWAS) analyses.
SPANDx can utilise PBS, SGE or SLURM for resource management. SPANDx can also run directly on the command line if no resource manager is available.
For the most up-to-date version of SPANDx, check us out on GitHub: https://github.com/dsarov/SPANDx
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... with pymol.
For specific non-pdb input/output of 2nd program there are convertation utils also available.
Programs are expected to compile in gcc under cygwin or pure linux environment.
Scripts to run many copies of program under pbs/torque cluster system are also available.
Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
Job Monarch is an addon to the Ganglia Monitoring System that provides batch job monitoring and archiving plus a graphical overview of clusters and assorted batch systems. Fully supported batch system: Torque, PBS and SLURM. Experimental: LSF, SGE
PBS Cluster Viz is a project to display information useful to admins and users about a computing cluster managed by a PBS-compatible resource manager. Information includes load and job distribution. Interactive as well as static output is available.
Transparent Local and Remote Parallelization for Java
Mpaxs provides a simple abstraction for executing Callables and Runnables either locally within the same Virtual Machine, on the same host via RMI, or on remote machines, also via RMI. It supports launching of new compute hosts via an extensible API, currently featuring local compute host launching and grid compute host launching using the DRMAA API.
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PBS Job Seer is a program which analyses the state of a PBS/Maui batch system and automatically generates a batch script for MPI jobs which would then be able to start immediately.
A C/C++ based client and server implementation of the OGSA Basic Execution Service, used to provide a Web Services interface to distributed resource managers such as Platform LSF and PBS/PBS Pro. The SOAP stack is provided by the gSOAP toolkit.
Rapid development of portal-based user interfaces for submitting compute jobs to remote compute resources. It supports the mainstream compute engine vendors Sun Grid Engine, PBS and Condor. Get a job-submission portal up and running in a few hours.
Cross platform GUI managing bookmarks and shortcuts in a portable way. Support import/export, search, encryption, hierarchical tags, USB key installation, various environments integration, OS-dependent shortcuts, plugins extensibility.
A web-based monitor for PBS-based clusters (e.g. OpenPBS and Torque). It provides an overview of node usage, running jobs, and active users. It is built on the pbs-python libraries.
FedStage DRMAA for LSF library is an implementation of Open Grid Forum DRMAA 1.0 (Distributed Resource Management Application API) specification for the submission and control of jobs to Platform LSF.
FedStage OpenDSP is an open implementation of SOAP Web Service multi-user access and policy-based job control using OGF DRMAA routines supported by distributed resource management systems like Sun Grid Engine (SGE), LSF, PBSPro, Torque or Condor.
FedStage DRMAA for Torque library is an implementation of Open Grid Forum's DRMAA 1.0 (Distributed Resource Management Application API) specification for the submission and control of jobs to Torque.
MyPBS is a PHP/MySQL/Perl accounting package for the Portable Batch System (PBS). It has advanced features such as projects, service-unit weights, per-user project permissions, pdf/csv reporting and much more!
The Java Batch System (JBS) is a batch queueing system in the
tradition of NQS and PBS for internal (Java-based) and system batch
jobs. Stand-alone operation and integration with existing batch
queueing systems, initially OpenPBS, is supported.
I developed this for PBS as a quick way to display local station events. This app uses the iCal standard, but in an XML format (xCal) with a MySQL and perl backend. You can import xCal events from an .xsc file to MySQL. Uses XML/XSL/XSLT.
The Maui Scheduler is a tool to to extend the capabilities of existing resource manager systems such as PBS, SGE, Loadleveler, and so forth. It provides powerful tools for managing and optimizing clusters systems and features to enable effective use of t