Search Results for "bwt"
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10 programs for "bwt" with 1 filter applied:
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This is a research project to possible improve compression using LZ77, LZSS or bwt, bwt is used on the bzip2 compression library, the v28 from 04/dec/2022 is the first version to almost beat lzma, indeed it is a tweak of lzma, the decoder for v28 will follow in a few days
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BCM
The ultimate BWT-based file compressor
BCM is a high-performance file compressor that utilizes advanced context modeling techniques to achieve a very high compression ratio. All in all, it's like a big brother of the BZIP2. -
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast... -
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ParaBWT - parallel BWT construction
a parallel and space-efficient Burrows-Wheeler transfrom constructor
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OpenDark is a free simplification of 'dark'. It's the first open BWT-DC compressor, which has a simple code, high speed and compression ratio. And it's waiting for your ideas! :)
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The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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Lossless compression program with various algorithms included. Intended for large XML files, but can compress any files. Best results with block compression (BWT+MTF+RLE) on large block over alphabet of words.
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BGZip is a compressor that uses BWT and others techniques to compress archives, sounds and videos with in high compression rates.
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Build Securely on AWS with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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Help implement an industrial strength Burrows-Wheeler transform compressor! Initial release covers block-sort, MTF coding, RLE coding, Huffman coding
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