Search Results for "parallel computing" - Page 2

GXP is a parallel/distributed shell, plus a parallel task execution engine that runs your Makefile in parallel on distributed machines. Very easy to install (no need to compile. install it on YOUR machine and use it on ALL machines).

PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. ...

For the purpose of policy simulation in coupled social-ecological systems (e.g. energy supply), a credible modelling of actors – especially citizens – and their decision processes is needed. This requires a framework capable of handling high numbers of heterogeneous agents (several hundreds of thousands). LARA (Lightweight Architecture for boundedly Rational Agents) meets these requirements and fills the gap between frameworks without built-in psychological foundations and full-fledged...

MapPSO is a tool for Ontology Alignment, which uses Discrete Particle Swarm Optimisation. A particle swarm is used to search for the optimal alignment. The algorithm is massively parallel and adapts naturally on parallel architectures.

AWK~plus is the next generation script practice environment. The AWK Language specifications and a main extension of GNU GAWK. Combination of Dynamic and Static typing. Parallel computing that a lock is free, and is thread safe at a language level.

SPJS is a simple skeleton for creating job programs which can be executed on different CPU cores or can be submitted to a batch system or any other parallel computer farm.

Simuquant is made to construct and simulate universal quantum circuits. It's GUI enables intuitive access and direct graphical feedback, making it useful in a classroom situation and the like. Simulation processing is done in parallel, utilizing parallel collections introduced in scala 2.9. This application has been created as part a bachelor-thesis at the Hamburg University of Applied Sciences. The thesis is available...

Java implementation of a Tuplespace. Moved to https://github.com/mike-k-houghton/tuplespace A Tuple is an ordered list of items. A Tuple Space is a form of associative memory where entries, tuples, are stored in the space and are retrieved using search criteria that are based on the intrinsic properties of the tuples. The two key operations are put get And that is it! There are refinements on these operations including, for example, timeouts where the tuple will only exist...

Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.

Equalizer is the standard middleware to create parallel OpenGL-based applications. Please visit https://github.com/Eyescale for current development information.

Parallel Colt is a multithreaded version of Colt - a library for high performance scientific computing in Java. It contains efficient algorithms for data analysis, linear algebra, multi-dimensional arrays, Fourier transforms, statistics and histogramming

Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.

This project to be release for parallel computing

Simdist lets you harness the power of cluster computing without any knowledge of parallel libraries such as MPI, and with no restrictions on programming language. Primarily targeted at evolutionary computing and similar master-slave configurations.

GridSim allows modeling and simulation of entities in parallel and distributed computing systems such as users, applications, resources, and resource brokers/schedulers for design and evaluation of scheduling algorithms. http://www.gridbus.org/gridsim

RT-BOINC stands for a Real-Time BOINC. It was designed for managing highly-interactive, short-term, and massively-parallel real-time applications. We implemented RT-BOINC on top of the recent BOINC server source codes.

This OpenCL Framework is for simple parallel computing with different devices.

Distributed Parallel Programming for Python! This package builds on traditional Python by enabling users to write distributed, parallel programs based on MPI message passing primitives. General python objects can be messaged between processors. Ru

Roomy is a programming language extension for writing parallel disk-based applications. All details of parallelism and disk I/O are hidden within the Roomy library.

Tsunami is an open-source high performance computing language. With it you can write streaming data-parallel algorithms that utilize GPGPUs for orders-of-magnitude speed-up with the ease of writing sequential algorithms.

PyMW is a Python module for parallel master-worker computing in a variety of environments. With the PyMW module, users can write a single program that scales from multicore machines to global computing platforms.

BSPonMPI is an implementation of the BSPlib standard on top of MPI. Both MPI and BSPlib are API's of communication routines meant for parallel computing, but BSPlib is easier to learn and its performance easier to predict.

Numerical package Parallel EXECution. Using a numerical package like Octave, 'npexec' distribute computation of a math formula among various network elements, collecting result automatically. ->y=npexec('fft(x.^m)', 'm=-8:8','x=ARG');

Meerkat is a distributed programming environment. It consists of a virtual machine which is suited to parallel processing. The data model is based on the concept of actors, although it is much more permissive than the traditional description.

Shared Questionnaire System(SQS) is a full-functional Optical Mark Reader(OMR) form processing system implemented in Java-Swing, XSL-FO and AJAX with straightforward GUIs. It is aimed at developing social platform to share knowledge about questionnaire.