Showing 5 open source projects for "loop-aes"

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  • 1
    SPINA

    SPINA

    Structure parameter inference approach for endocrine feedback control

    ... (SPINA-GBeta), an estimate for the insulin receptor gain (SPINA-GR) and a static disposition index as a measure for the loop gain of the feedback loop (SPINA-DI). Both implementations of SPINA have been validated in clinical studies on the basis of large cohorts.
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    Downloads: 10 This Week
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  • 2
    LoopMatcher

    LoopMatcher

    Find sequence-specific stem-loops in FASTA and GenBank files.

    LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor...
    Downloads: 0 This Week
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  • 3

    PingPongPro

    Find ping-pong signatures like a pro

    ... the production of more piRNAs, thus reinforcing the anti-transposon response in a feed-forward loop called the "ping-pong cycle". A key question in ping-pong cycle research is identification of piRNAs which are amplified through the cycle. PingPongPro is a command-line tool for detecting ping-pong cycle activity in piRNA-Seq data. PingPongPro was developed at the Institute of Molecular Biology gGmbH in Mainz.
    Downloads: 1 This Week
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  • 4

    Cascaded Layering for MFL

    Implementation of Cascaded layering framework for Mixed Feedback Loop

    Downloads: 0 This Week
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  • 5
    CLAM is a model of a large-scale cortical network, which incorporates the interaction between object-based and spatial attention and working memory.
    Downloads: 0 This Week
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