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Extract and reformat a sequence database search or multiple alignment
...:
- Sequence database search: BLAST, FASTA suites.
- Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF.
Outputs:
- HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated).
Found a bug?
Please open an issue on the MView issue tracker at https://github.com/desmid/mview/issues or send an email to biomview@gmail.com.
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways.
* Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...
A tool for unbiased and reproducible cell morphometry in Fiji/ImageJ2
... of nucleus features and a double-scale analysis of orientation can be performed. The whole algorithm is implemented as a one-click procedure, thus minimizing the user intervention and the ensuing biases and errors of human origin. By this way, MORPHEUS is intended to be a useful tool to face the issue of reproducibility in bioimage analysis.
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.
The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF.
For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877...
You asked, we delivered! Auth0 has expanded our Free and Paid plans to make it even easier for you to protect your customers identities.
In our new Free Plan, you'll receive more MAUs than ever. You'll also be able to add Passwordless authentication, use your own custom domain, and more. Our expanded Paid Plans include increased connections, more MFA offerings, and more. Check out what's new.
The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling.
!!!! Important Announcement !!!!
We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired. Please use the Git-Hub issue...