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...You: either drag and drop MSP files onto the window, or pass filenames though a command line argument. Command line arguments: /? displays help information /f anything following is a file you want to process. Things you should know: Change what things in the MSP get mapped into a new name in the MGF in Settings. Anything not on the mapping list is mapped through unaltered. And if this doesn't mean anything to you then this probably isn't the app for you

...You: put a peak list in the clipboard from your favourite mass spec viewing software, append another list if you want (then you can merge lists together), copy-out or save the MSP that appears in the right hand box. Command line arguments: /? displays help information - Start from here. There are a few of them. And if this doesn't mean anything to you then this probably isn't the app for you Happy MSPing

...You: specify the input line that contains the empirical formula of the parent ion, specify the key that identifies a formula and then the formula) separated by one space character, either drag and drop mgf files onto the window, or pass filenames though a command line argument. Command line arguments: /? displays help information /w runs in windowed mode (the thing you are looking at now) /f anything following is a file you want to process. Things you should know: The elemental composition is not a sophisticated calculation.