Open Source Visual Basic Bio-Informatics Software

SeqHunter2 is a stand-alone software with graphical user interface, running on Microsoft windows system. It is programmed with the following functions: 1) collect and manage local sequence databases; 2) run blast search by using a batch of sequences and with abundant output formats; 3) extract sequences by a set of IDs or coordinates; 4) generate sequences alignment; 5) edit sequence and translate nucleotide to proteins; 6) browse genome and search genes; 7) collect resource items and link to the website. The full version collects all available oomycete plant pathogens genome sequences and information of research related resource, while the lite version is flexible for non-oomycete users to collected the data they are interested.

Computer programs for application in Sports science, Physical Culture, among others. By Enrique R.P. Buendía Lozada. buendiaenr@gmail.com , Benemérita Universidad Autónoma de Puebla (BUAP), México. (Software without any warranty).

OligoYap can be used to design classical PCR, SYBR Green, TaqMan, MGB, Molecular Beacons, Microarray and Real-Time PCR primers/probes and for bioinformatics analysis. It has the features of enzyme cut analysis, mutation analysis, DNA/protein match and BLAST. You can easily record laboratory materials/files, prepare PCR mix and many other laboratory operations. It works on windows8.1 and earlier operating systems, but has not been tried on windows10 and later. For better images, you can right-click the exe file and check the features/compatibility "Disable screen scaling in high DPI settings" box. On some systems (as win8.1) you may also need to check the "run as administrator" option. You can download the Turkish version (OligoYap_tur_portable.exe) from the Project Activity or by clicking on the Files menu. You can download the user manual video (OligoYap_eng_video.avi) from the Project Activity (click See All Activity) or by clicking on the Files menu.

ATGC is an application containing a pack of useful algorithms in user-friendly interface for aligning nucleotide sequences, searching consensus and restriction sites, predicting amino acid sequence, docking contigs and so on.

BACMan is a Microsoft Access based application designed for the management and analysis of hybridization data related to the high throughput screening of large insert genomic libraries associated with physical mapping projects.

CSim3a.exe will install a Lesson and Simulation of Bacterial Chemotaxis. Bacterial Chemotaxis is the motion up or down the direction of an attractant or repelant of each bacteria. The simulation also demonstrates the bacterial mechanism of this utility. The Lesson also gives the Basic code used in the simulation. Installs as motility3a in c:/users/public/CSim3a

Bantam is a Distributed Annotation System (DAS) server for laboratories with limited bioinformatics support. Bantam keep things simple by using PHP, GFF and a powerful Microsoft Excel spreadsheet for integrated identifier mapping and ontology term lookup

BIBMASTER is a database application to manage biodiversity projects. It's designed to make easier the compilation and management of taxa-level, specimen-level, nomenclatural and bibliographic information.

A user-friendly interface for running simulations of the gene networks comprising the circadian clock. Modules allow the simulation of experimental protocols with just a few mouse clicks. Users can fine-tune simulations to suit their particular interests.

The DNA pattern represents a new method of analysis for DNA sequences. In general it can easily detect relationships among species over the evolutionary landscape. Largely, in bioinformatics the DNA pattern method is unexplored and many discoveries can be made through it. One of the questions to which an answer was given is: How many types of promoters are out there regulating the genes ? It seems that there are 10 types of promoters. The project also contains 20,000 images (DNA patterns) that can be analyzed in relation to various genetic disorders (if Homo Sapiens) or for understanding the evolutionary mechanisms between species. References: [1] Gagniuc and Ionescu-Tirgoviste: Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters. BMC Genomics 2012, 13:512. [2] Gagniuc and Ionescu-Tîrgoviste. Gene promoters show chromosome specificity and reveal chromosome territories in humans, BMC Genomics 2013, 14:278. Source code VB6 (Visual Basic 6.0)

Darwin_Test validates the Darwincore2 format, the standard for natural history collections and observational databases on the GBIF network.

Darwin_Test, diseñado para validar los datos relativos a especímenes almacenados en tablas con formato Darwin Core, incorpora en esta nueva versión 1.4 la posibilidad de visualizar en inglés todos los textos y mensajes de los formularios.

Darwin Test is a software application to validate and check records from tables in a Darwincorev2/Darwincorev4 format.

Darwin Test is a software application to validate and check records from tables in a Darwincorev2/Darwincorev4 format.

Darwin Test is a software application to validate and check records from tables in a Darwincore1.2 or Darwincore1.4 format. It also exports the previous formats to the Darwin Core Archive standard and allows the inverse process.

3D Realtime Simulation der Evolution des Lebens. Frei erweiterbares Gen/Mutations-System mit Direct3D-Engine. <b>Wichtig ".NET 2.0 beta"-basierent !</b> Also wird zumindest ein Visual Basic 2005 Express Beta benötigt.

A tool to FIND DNA REPEATS (tandem and short): RFRE is a mini tool to search for the repeated DNA sequences (SHORT REPEATS OR TANDEM REPEATS) characters by using the regular expression language (VB script). The Metacharcter and their behaviours in the context of regular expressions are the main methods to identify the different searched patterns and by different combination of Metacharcter, the programmed tool can search and detect the pattern of DNA sequence. Repeater Finder Regular Expression Tool Regular Expression for Protein Motif Search and SSR sequence. https://sourceforge.net/projects/rfret/files/RFRE122019.exe/download https://www.preprints.org/manuscript/201910.0249/v1 https://sites.google.com/must.edu.eg/finding-dna-repeats/home ---------------------------------------------- *****Very important program must be downloaded before you run the EXE FILE OF RFRE***** 1-VB6 Runtime Plus 2.2.exe , https://sourceforge.net/projects/vb6extendedruntime/

This is an global sequence alignment tool (GSA) created using visual basic 6.0. In this software, Needleman & Wunsch algorithm is used.

GenMAPP is an application designed to visualize genomic data on maps representing biological pathways and other groupings of genes. GenMAPP also includes tools for performing global analysis of genomic data in the context of the Gene Ontology hierarchy.

HZL Beta 3 is the updated version of a software application based on MS-Access, designed to manage and digitize botanical and zoological collections.

HZL Beta 3 is the updated version of a software application based on MS-Access, designed to manage and digitize botanical and zoological collections.

HERBAR es una aplicación informática para informatizar y gestionar colecciones botánicas, basada en MS-Access. Los créditos y toda la información sobre Herbar se pueden encontrar en http://www.gbif.es/herbar/herbar.php

Herbar 3.5e is the updated version of a software application based on MS-Access, designed to manage and digitize botanical collections. Find credits and further information about Herbar 3.5e on its website: http://www.gbif.es/herbar/herbar.php

Herbar 3.5f is the updated version of a software application based on MS-Access, designed to manage and digitize botanical collections. Find credits and further information about Herbar 3.5f on its website: http://www.gbif.es/herbar/herbar.php

Herbar 3.6 is the updated version of a software application based on MS-Access, designed to manage and digitize botanical collections. Find credits and further information about Herbar 3.6 on its website: http://www.gbif.es/herbar/herbar.php