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LBXR - LOAD BLAST XML RESULTS
O sistema permite que sejam importados resultados obtidos por meio de pesquisas de similaridade a partir do BLAST, com resultados gerado no formato XML para o banco de dados relacional MariaDB ou MySQL.
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission.
HOWTO:
1) Set VM network settings to a bridged adapter type.
2) Load VM to client
3) From host:
$ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure'
--- passwd = 616287xx
5) or ssh into host with X forwarding, and type runme
This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The...
Pipeline for large-scale genome changes analysis of genome datasets.
The active use repository has migrated over to: https://github.com/darrenabbey/ymap
The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github.
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Eukaryotic pathogens have complicated and dynamic genomes.
To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of...
HomGL is a web-based tool for comparing gene lists obtained e.g. by
microarray studies. Unigene, Locus Link & Homology databases are used
to compare gene lists with different accession numbers and between different
organisms.