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A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
Automatic design of primers for miR-specific RT-qPCR
...Quantification of miRNAs by a simple and specific qPCR method. Methods in Molecular Biology. 1182, 73-81.).
The program was written in Ruby and is available as source code for developers and as an .exe file for easy use.
Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes