Search Results for "linux utilities"

This tool is an integrated graphical interface that simplifies molecular dynamics simulations using Gromacs. It provides a structured, tab-based environment to set up, execute, and analyze simulations data without complex command-line operations. The software automates tasks such as topology generation, solvation, ion addition, minimization, equilibration, and production runs while executing GROMACS commands in the background. Built-in monitoring tracks CPU, RAM, and disk usage to ensure...

Project now hosted at GitHub: https://github.com/djparente/coevol-utils

Command-line, Entrez, NCBI e-utilities client, written in Python; developed for Linux

Comman-line client to Entrez, e-utilities, written in Python, developed for Linux

A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.