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Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.
Xmipp is a well-known package in the EM image processing. It is integrated...
A bioinformatics tool for the annotation and tag-counting of next-gen Illumina Solexa datasets. TASE works with CASAVA 1.0 builds, providing annotation, tag counts and visualization in a rapid manner.
PowerTalk automatically speaks Microsoft PowerPoint presentations. For presenters who find speaking difficult, audiences containing people with visual impairments and fun educational uses. Uses synthesised computer speech provided with Windows
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This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein.
Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
The database client with the highest user satisfaction
DbVisualizer has everything you need to build, manage and maintain state-of-the-art database technologies.
DbVisualizer is the highest performer among the universal database tools in the G2 grid for universal database management systems. Write queries in an advanced SQL editor that has all the smart features you need. Speed up your coding and avoid errors. Design your favorite workspace that is saved between sessions. Tag objects and script files as favorites for instant loads. Autosave your work and resume where you left off with editors preserved between sessions. Connect with high security. Work with optimized features and functions, improved for over a decade by continuous feedback from thousands of users. Customers range from self employed consultants to major institutions and global corporations with more than 8,000 licensed users.
DrPangloss is a python implementation of a three operator genetic algorithm, complete with a javaswing GUI for running the GA and visualising performance, generation by generation
openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database
A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.