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Showing 2 open source projects for "graph tool"

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    Mix

    Mix is a tool to combine multiple assemblies from NGS data.

    Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension.
    Downloads: 0 This Week
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    Python library to convert networks from/to many different formats, like the ones used in Pajek, Cytoscape and other popular graph formats like GML. It also includes support to integrate experimental data to the netowork.
    Downloads: 0 This Week
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