Showing 9 open source projects for "e-speaking"

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  • 1
    e-Species

    e-Species

    A taxonomically intelligent biodiversity search engine

    This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's.
    Downloads: 3 This Week
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  • 2
    ChIP-RNA-seqPRO

    ChIP-RNA-seqPRO

    ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

    ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,...
    Downloads: 2 This Week
    Last Update:
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  • 3

    LipidWrapper

    Create lipid-bilayer models of arbitrary geometry.

    ...When building large-scale models of whole subcellular environments, models of lipid membranes with carefully considered, biologically relevant curvature are essential. LipidWrapper, written by Jacob Durrant in the lab of Rommie E. Amaro, is capable of creating curved membrane models with geometries derived from various possible sources, both experimental and theoretical. We are hopeful that this utility will be a useful tool for the computational-biology community.
    Downloads: 0 This Week
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  • 4

    Pyntrez

    Command-line, Entrez, NCBI e-utilities client, written in Python

    Command-line, Entrez, NCBI e-utilities client, written in Python; developed for Linux
    Downloads: 0 This Week
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  • 5

    Pyntrez NCBI Database Client

    Command-line, Entrez, NCBI e-utilities client, written in Python

    Comman-line client to Entrez, e-utilities, written in Python, developed for Linux
    Downloads: 0 This Week
    Last Update:
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  • 6

    WebChemViewer

    A simple program for sharing molecular structures with associated data

    ...The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the FreeBSD license. It was created by Jacob Durrant, a post-doc in the lab of Rommie E. Amaro.
    Downloads: 0 This Week
    Last Update:
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  • 7
    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
    Downloads: 0 This Week
    Last Update:
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  • 8
    """ E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
    Downloads: 5 This Week
    Last Update:
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  • 9
    PowerTalk automatically speaks Microsoft PowerPoint presentations. For presenters who find speaking difficult, audiences containing people with visual impairments and fun educational uses. Uses synthesised computer speech provided with Windows
    Downloads: 13 This Week
    Last Update:
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