Showing 2 open source projects for "automation workflow"

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    PPLine

    SNP calling, annotation and gene/transcripts expression quantification

    PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of...
    Downloads: 0 This Week
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  • 2

    Erda

    Workflow automation of Thomas networks

    This script is supplementary to the article "Time series dependent analysis of unparametrized Thomas networks" and performs the workflow steps described in section 7.
    Downloads: 0 This Week
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