Showing 102 open source projects for "c--"

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  • 1
    Tandem mass spectral peptide identification and validation software, similar to X!Tandem, OMSSA, MyriMatch. Suitable for single hosts through large clusters. Written in Python for simplicity, with performance-critical sections in C++.
    Downloads: 0 This Week
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  • 2
    This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
    Downloads: 0 This Week
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  • 3
    MIVF - Medical Imaging and Visualization Factory, is a framework for medical applications. It supplies a platform, in which image processing and 3D visualization algorithms can be employed as reusable components (functional modules or plugins).
    Downloads: 0 This Week
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  • 4
    "Blue Planet" is a research project simulating the behaviour and darwinian evolution of unicellular lifeforms, each controlled by its own genetic program. Moreover, "Blue Planet Inhabitants" are suited for swarm intelligence and swarm research.
    Downloads: 1 This Week
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  • 5
    Pythia is a thermodynamically based PCR primer design program.
    Downloads: 0 This Week
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  • 6
    An open source implementation of a protein threading program based on the energy functions and techniques originally introduced by Prospect.
    Downloads: 0 This Week
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  • 7
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
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  • 8
    A project to distributed phylogenies into a MPI Cluster.
    Downloads: 0 This Week
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  • 9
    Video monitoring tool for insect analysis
    Downloads: 0 This Week
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  • 10
    Disloki is a modified version of Loki (loki.homeunix.net) which works as a Boinc application. The project also contains support programs to create and maintain a Loki based boinc project.
    Downloads: 0 This Week
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  • 11
    Genetic programming environment to inference context free grammars base on positive and negative examples of language.
    Downloads: 0 This Week
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  • 12
    Biological Annotation Tool is a general-purpose high speed environment for manipulating biological sequence annotations in multiple input and output formats. A plugin-style API permits much extensibility.
    Downloads: 0 This Week
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  • 13
    A tool to calculate atoms exposition to a probe in a three dimensional molecule structure.
    Downloads: 4 This Week
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  • 14
    Simulator of virtual animals made up of biological neural networks for research in the Computational Neuroscience field.
    Downloads: 0 This Week
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  • 15
    Tools for comparative sequence analysis. Includes FamilyRelations (GUI) and a C++ toolkit/Python wrapper for doing fixed-width-window analyses.
    Downloads: 0 This Week
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  • 16
    QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
    Downloads: 1 This Week
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  • 17
    ArrayOligoSelector (AOS) systematically designs gene specific long oligo probes for entire genomes. The program optimizes the oligo selections for several parameters, including uniqueness in the genome, internal repeats, self-binding, and GC content.
    Downloads: 0 This Week
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  • 18
    SureFit generates 3D mesh surfaces (in VTK and Caret formats) from 3D structural MRI volumes (in formats such as Analyze, AFNI, raw).
    Downloads: 0 This Week
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  • 19
    Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org
    Downloads: 0 This Week
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  • 20
    Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
    Downloads: 0 This Week
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  • 21
    Path Sim contains a collection of tools for analysing Biochemical pathways with respect to stochastic behavior and cell-to-cell variations.
    Downloads: 0 This Week
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  • 22
    ..., for "Hordes of Little Atoms," is a project to develop a lean, modular, scalable toolkit for massive simulations of particle (molecular) dynamics. It is written in C and Python to get the best balance between programmer and run time.
    Downloads: 0 This Week
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  • 23
    DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
    Downloads: 0 This Week
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  • 24

    malty_DEPRECATED

    translates alignments of A-to-B and B-to-C to A-to-C; has BAM support

    Development moved to: https://bitbucket.org/rongchenlab/malty Docs moved to: http://malty.readthedocs.org/en/latest/
    Downloads: 0 This Week
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  • 25
    Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.
    Downloads: 0 This Week
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