Showing 58 open source projects for "python file"

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  • 1
    A python library for handling and analyzing biological sequence annotations as described in GFF files (General Feature Format). The library is intended to be a complete framework for this file format.
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  • 2
    Common Interface for NMR structure Generation.
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  • 3
    The aim of our programm is to help lab on counting species and analyze the results with statistics tools.
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  • 4
    This software screens a given peak list against web based NMR databases (nmrshiftdb, HMDB...) and return possible molecules. It also take a given molecule to return expected peaks list.
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    Create and run cloud-based virtual machines.

    Secure and customizable compute service that lets you create and run virtual machines.

    Computing infrastructure in predefined or custom machine sizes to accelerate your cloud transformation. General purpose (E2, N1, N2, N2D) machines provide a good balance of price and performance. Compute optimized (C2) machines offer high-end vCPU performance for compute-intensive workloads. Memory optimized (M2) machines offer the highest memory and are great for in-memory databases. Accelerator optimized (A2) machines are based on the A100 GPU, for very demanding applications.
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  • 5
    Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.
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  • 6

    PLGS Assistant

    Easing the identification of high quality PLGS identified peptides

    This software tool assists in the identification of PLGS identified peptides that provides high quality HDX information. The output file is formated so it can be directly imported into DynamX. This tool requires that the user has python installed.
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  • 7
    trimAl can consider several parameters, alone or in multiple combinations, in order to select the most-reliable positions in the alignment. These include the proportion of sequences with a gap, the level of residue similarity and, if several alignments for the same set of sequences are provided, the consistency level of columns among alignments. Moreover, trimAl allows to manually select a set of columns and sequences to be removed from the alignment. trimAl implements a series of...
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  • 8

    GenEpiO

    The Genomic Epidemiology Ontology covers food-borne disease terms

    Here we introduce a Genomic Epidemiology Ontology (GenEpiO) that covers vocabulary necessary to identify, document and research food-borne pathogens and associated outbreaks. We envision various subdomains including genomic laboratory testing, specimen and isolate metadata, and epidemiological case investigations. The project files are currently hosted at https://github.com/GenEpiO/genepio/ . Here we provide the genepio-consortium@lists.sourceforge.net listserve. Terms for these subdomains...
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