Showing 37 open source projects for "python compile source code"

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  • 1

    EducationalLCS

    eLCS - Educational Learning Classifier System

    ... algorithm in order to illustrate how work, how they are coded, and what impact they have on how an LCS algorithm runs. The Demo 6 version of eLCS is most similar to the UCS algorithm. Each version only includes the minimum code needed to perform the functions they were designed for. This way users can start by examining the simplest version of the code and progress forward. This code is intended to be used as an educational tool, or as algorithmic code building blocks.
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  • 2
    SPADE

    SPADE

    A toolkit for developing and deploying protein structure algorithms.

    The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.
    Downloads: 0 This Week
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  • 3

    CDSbank

    multi-sequence extraction, filtering & formatting

    ... scenarios while allowing great flexibility when needed. Access is via a free web service at http://hazeslab.med.ualberta.ca/CDSbank/. SourceForge code can be used to build a local installation.
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  • 4

    Atlas2Cloud

    Atlas2 Genome Analysis Pipeline on Amazon Web Services

    This is the backend source code of the Atlas2-Cloud pipeline on Amazon which starts and terminates worker nodes, runs analysis and monitors worker instances. It is PRIMARILY meant to be used through Amazon Web Services (AWS) management console by looking for the public Atlas2-Cloud machine image. Alternatively, the code can also be used for running the pipeline from your computer. By installing this software on your computer you will be setting up your computer to act as the head node...
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  • 5

    Clinical Evidence Detector

    Detector of clinical evidence

    This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials. If you use this code please cite this paper: P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia. http://www.ics.mq.edu.au/~diego/publications/hikm12.pdf
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  • 6
    Biologic Institute's Stylus simulation software suite. (See the SVN repository for source code.)
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  • 7
    The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.
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  • 8
    """ E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
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  • 9
    SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and share code that is common to many tasks and programs.
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  • 10
    Pymerase is a tool intended to generate a python object model, relational database, and an object-relational model connecting the two. However it has been extended to also output webpages and can be easily extended to output whatever else you might like.
    Downloads: 0 This Week
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  • 11
    The purpose of this project is to make available a variety of tools written in Python.
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  • 12
    Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
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