Showing 365 open source projects for "java open source"

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  • 1
    Pythia is a thermodynamically based PCR primer design program.
    Downloads: 0 This Week
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  • 2
    An open source implementation of a protein threading program based on the energy functions and techniques originally introduced by Prospect.
    Downloads: 0 This Week
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  • 3
    Integration of results from multiple homology searches
    Downloads: 0 This Week
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  • 4
    A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
    Downloads: 3 This Week
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  • 5
    A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
    Downloads: 1 This Week
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  • 6
    A web-based repository of plasmids and biobricks (see http://parts.mit.edu) plus related utility programs that support synthetic biology research. Note: This project is not updated any longer. A completely re-written and much better version of this web server can be found here: http://www.rotmic.org
    Downloads: 0 This Week
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  • 7
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
    Downloads: 0 This Week
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  • 8
    pyTray is protein crystallization management software. It allows the user to design screens, helps in setting up, and manages the results obtained form the screen.
    Downloads: 0 This Week
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  • 9
    This program has been written having in mind to create an useful tool to evaluate the Motor Evoked Potentials (MEPs) generated by Transcranial Magnetic Stimulation (TMS) and recorded with the program "Signal" (version 2.xx).
    Downloads: 2 This Week
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  • 10
    A library and associated applications for searching for patterns in protein structures and measuring geometric parameters.
    Downloads: 0 This Week
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  • 11
    pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.
    Downloads: 0 This Week
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  • 12
    The WISDOM project is a Grid based production environment used to deploy bio-informatics large scale applications.
    Downloads: 0 This Week
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  • 13
    PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein.
    Downloads: 0 This Week
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  • 14
    MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
    Downloads: 0 This Week
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  • 15
    Artificial plants laboratory.
    Downloads: 0 This Week
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  • 16
    Graphical interface for ModelTest and MrModelTest written in Python, for Windows, Linux and Mac OSX
    Downloads: 0 This Week
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  • 17
    BushMan is a web interface and a quality assurance tool for biological sequence assembly. It is a small application that helps process chromatograms, and it assembles using Phred and Phrap. It produces a FASTA formatted consensus sequence.
    Downloads: 0 This Week
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  • 18
    A project to distributed phylogenies into a MPI Cluster.
    Downloads: 0 This Week
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  • 19
    This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).
    Downloads: 0 This Week
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  • 20
    Video monitoring tool for insect analysis
    Downloads: 0 This Week
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  • 21
    Disloki is a modified version of Loki (loki.homeunix.net) which works as a Boinc application. The project also contains support programs to create and maintain a Loki based boinc project.
    Downloads: 0 This Week
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  • 22
    ParticleStats is software for analysing tracked particles from RNA Localization experiments. Analysis is performed on the X and Y coordinated of the tracked RNA particles
    Downloads: 0 This Week
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  • 23
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 0 This Week
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  • 24
    PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
    Downloads: 0 This Week
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  • 25
    a cross-platform framework and environment for haplotype analysis with a special focus on human and medical genetics in python/wxpython
    Downloads: 0 This Week
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