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An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. The design and standard...
OpenCryobank is an attempt to develop a simple, free and open database system for frozen samples inventory in biological laboratories. It is mainly aimed at semen and embryo cryobanks, but it can be used for any kind of biological sample.
Visit us: http://reprobio.unileon.es/services/analisis-cromatina-espermatica/
CIPPEX is database application to manage potato and sweetpotato field and lab experiments as part CIP's (International Potato Center) research informatics toolset. It has facilities to create field books and facilitate subsequent data analysis.
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GenoCAD is a CAD software for synthetic biology. This application provides a web-based tool to design plasmids, artificial gene networks, and other synthetic genetic systems composed of standard genetic parts. It includes a parts management system, a rule-based design tool, and a simulation engine. This project has morphed into a SaaS model. The open source code is no longer maintained.
Clover is a simple lab information management system (LIMS) designed for biology labs, especially plant biology labs. It provides an easy way to manage and handle the information of lab material, catalogs (inventories), and orders.
USE PHP 5.*!
Clover will not work on PHP 7.*!
The wiki page contains detailed help documents: https://sourceforge.net/p/cloversystem/wiki/Home/
For lab instrument scheduling, please use Cloveriver:
https://sourceforge.net/projects/cloveriver/
Please...
A system for automated analysis and data handling for RNAi screens
The iBRAIN2 software system for RNAi high-content screening integrates automated analysis and customizable data management.
It enables robust and complex parallel processing on computer cluster infrastructure and allows for reliable storage of primary and resulting data sets.
The GIIAF Microscopy Library, that uses customised OMERO software
This project incorporates a suite of tools that aim to allow researchers within Griffith's Imaging and Image Analysis Facility (GIIAF) to efficiently and effectively provide secure, centralised, web-accessible data storage, management and manipulation.
The open-source Java-based OMERO software was customised to provide most of the features of this project.
We wish to develop a personal laboratory information management system for proteomics. LIPAGE is an open source laboratory information management system for 2DPAGE-based proteomics.
The Generic Genetic Studies Database (GGSD) is a web-based, relational database driven data management software package for the management of large scale genetic studies.
Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database.
GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features
PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.
Prism is a system for displaying a visual overview of the types of research being done at a given institution and to quickly connect researchers with like interests.
Controversial ideas of Williamson, Margulis & others suggest speciation by hybridizing might be more common than originally thought.
Taking this concept to the nth degree & assuming that indeed, speciation mostly occurs by hybridizing events, not the accumulation of mutations or genetic drift, here is a catalogueoflife2gedcom converter. It allows the tree of life to be displayed as a human genealogy tree with hybridizing events depicted as "marriages." The idea then is that mutation...
EDGE3 is an open-source, web-based application allowing for the management, storage, analysis, and controlled sharing of transcription-based microarray data generated on the Agilent DNA platform.
"Plasmidb" is a databasemanagement system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more
Trauma registry suite; Data collection application and server scripts to build trauma data warehouse and perform web-based analysis reporting. Cross-platform compatible for Windows, Apple, Unix, or Linux.
HalX is a LIMS (Laboratory Information Management System). It is meant to be able to keep track of all the experimental details of any type of biochemical, molecular biology or structural biology experiment (but not all are available now...)