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TaxonGrab is an NLP (Natural Language Processing) solution written in PHP, which leverages systematic nomenclature rules that are used for taxonomic nomenclature in scientific publications.
The Gene Ontology Annotative Listing (GOAL) is an open-source PHP application for assembling and visualizing Biological Sequences based on their corresponding hierarchal Gene Ontology structure, described by the gene ontology consortium.
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TSE is a test bed for a web service approach to federating taxonomic name databases. Put in English, it takes your query and talks to a number of different databases, asking each one whether they contain that name.
It moves by itself inside networks like virus infection & plagues, it is being written to solve computer virus problem drastically and responsibly. It is legal, free and open for public domain to improve W3 ICT Security.
HomGL is a web-based tool for comparing gene lists obtained e.g. by
microarray studies. Unigene, Locus Link & Homology databases are used
to compare gene lists with different accession numbers and between different
organisms.
Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.
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The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using \"vanilla php\".
Ce projet couvre tous les développements logiciels qu'Unitec, le club de robotique de l'UTBM, va entreprendre pour la coupe de France de robotique E=M6.
HalX is a LIMS (Laboratory Information Management System). It is meant to be able to keep track of all the experimental details of any type of biochemical, molecular biology or structural biology experiment (but not all are available now...)
BASE is a database server to manage (locally) the massive amounts of data generated by microarray analysis. It handles biomaterials, raw data and images, and provides integrated and plug-in-able normalization, data viewing and analysis tools.
Le projet eflore, porte par l'association tela-botanica
(http://www.tela-botanica.org), a pour but d'etablir les structures
d'informations necessaires ŕ l'etablissement d'une flore electronique
et de developper les outils informatiques les exploitant.
Biological research groups need to store and analyze large amounts of diverse data. LISA (LabInfoSystem:) stores this information in an easily accessible customizable web-based database. LISA requires PHP4 and MySQL. Keywords: Structural Biology, Genomics
Bantam is a Distributed Annotation System (DAS) server for laboratories with limited bioinformatics support. Bantam keep things simple by using PHP, GFF and a powerful Microsoft Excel spreadsheet for integrated identifier mapping and ontology term lookup
LaboLIM is a laboratory information system aimed at microbiology laboratories. It is licensed under the GPL V3.0. It is written in PHP and currently uses SQLite 2.1, but could be converted to MySQL.
It was partially developed with a working micro lab.
Looking for some people to chip in and make it a nice project.
Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.
BioEval, a web-based evaluation platform for one or multiple biomedical text extraction systems and the collaborative creation of gold standards. Handles evaluation of extraction of one to many related entities, plus supporting evidence and normalization
A web based tool that combines automatic extraction of gene and protein entities with manual curation done by the researchers who read and write the biomedical texts. The interface is loaded in web browser extensions and viewed along with the abstract.
BioPortals are a webportal solution for Biodiversity data with modular setup and single access point to a large array of heterogenous information sources. BioPortals can be used for local or thematic biodiversity portals by organisations like GBIF nodes.
The HealthQuilt project is a collection of Health Information tools released by the HealthQuilt team. This tools include CCR tools, as well as tools to improve the quality and coordination of healthcare.