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...Features include:
- Efficient k-mer counting and deBruijn graph traversal
- Two modes of handling of diploid allelic variation
- Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy.
The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server.
Manuscripts in submission:
https://arxiv.org/abs/1703.09852
https://arxiv.org/abs/1608
...Double Layered Learning for Biological Event Extraction from Text. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistic
CTM, an acronym for Closure Task Manager, is a generic Web based project management system used to manage tasks and the project team for one or more genome finishing (Closure) projects.