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PB-sQF_BacterialTyping

Bacterial Typing from either assembled or raw short reads file

Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain. The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/).

Downloads: 0 This Week

Last Update: 2016-10-09
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