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WhichGenes is a web-based bioinformatics tool. It allows the user to extract lists of genes from multiple sources in order to use them for further experiments.
Hermes provides institutions such as museums the ability to extract and publish biological collection information in formats such as DarwinCore (via TAPIRLink) and via MapServer.
Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies.
It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements.
Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).