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The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java.
The main home page of the CDK is now at: http://cdk.github.io
Renders glycans and glycopeptides with frag. info using SNFG format
...To install in Linux, follow in-package instructions or visit the VirtualGlycome.org FAQ page.
The source code can be edited and run using MATLAB2014b or later.
How to Cite:
DrawGlycan-SNFG: a robust tool to render glycans and glycopeptides with fragmentation information
Kai Cheng; Yusen Zhou; Sriram Neelamegham
Glycobiology (2017) 27 (3): 200-205
Source code also available at:
https://github.com/neel-lab/DrawGlycan-SNFGv2
Abstract & Full Text:
https://doi.org/10.1093/glycob/cww115
A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.