Search Results for "php data"

Open Information Systems for Emergency Services (Open ISES) is a community of software developers, paramedics, EMTs, law enforcement & fire fighters working together to create open source software & training materials for the emergency service community.

The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging (http://www.svi.nl/) for parallel batch deconvolutions.

* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...

Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data...

An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. The design and standard permits...

GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.

CIPPEX is database application to manage potato and sweetpotato field and lab experiments as part CIP's (International Potato Center) research informatics toolset. It has facilities to create field books and facilitate subsequent data analysis.

A simple database designed to allow easy storage and retrieval of Biosort data for C. elegans, but which has a wide potential application for organizing large datasets.

AGENDA (Application for mining Gene Ontology Data)

The Generic Genetic Studies Database (GGSD) is a web-based, relational database driven data management software package for the management of large scale genetic studies.

PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.

The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.

Arrayline is an extensible bioinfomatics data processing platform

This workbench tries to manage and analyze neuroscientific animal data with an emphasis on behaviorally orientated experiments. It's goal is to use the behavioral experimental data (stimulus, task, species...) as its source and perform analysis to e

WebSat allows one to submit his/her sequences, visualise microsatellites, design primers suitable for their amplification, and export the resulting data, thus facilitating the development of SSR markers.

EDGE3 is an open-source, web-based application allowing for the management, storage, analysis, and controlled sharing of transcription-based microarray data generated on the Agilent DNA platform.

This is a web based disease monitoring for monitoring diseases like chikungunya, malaria - reported by hospitals in a district, county, state or country. There is a reporting & analysis module and a GIS module which displays the data using google maps.

The NCD Toolkit is a PHP application to collaboratively manage biological collection metadata that corresponds to the TDWG TDWG Natural Collection Description (NCD v0.8) format. The project was initially funded by GBIF.

epiPATH is a platform to store and analyze evolutionary, population and epidemiological data from infectious diseases. It is designed to aid users in daily work with data generated in sequencing projects as well as clinical and epidemiological data.

S3DB - Simple Sloppy Semantic Database - is a PHP / mySQL,postgreSQL implementation of a local database infrastructure with a semantic architecture. The philosophy of its development is data driven.

A PHP webapp to upload taxonomic checklists as Excel or CSV files to be served as TDWG TCS XML/RDF. It can handle multiple checklists, has a Tapir light webservice and a taxonomic tree of species names created from taxonomy in a checklist can be browsed.

biodivDP is a web application that can be used for accumulation and dissemination of, but not limited to, biodiversity and taxonomy specific data.

Stratos viewer is a web based utility to examine DICOM medical images through a web browser. This project is not active anymore. If you are interested in a Dicom web viewer, have a look at our new development: MedView [ https://github.com/jap1968/medview ]

The BioArray Software Environment (BASE) v1.2 is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. PrognoChip-BASE extends BASE v1.2.16, providing more functionalities.