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The Cylindrical Alignment App is the successor to Cylindrical BLAST Viewer. Similarly, it arranges search or other comparisons, against their "axis". Searches can be made by Basic Local Alignment Search Tool, ClustalW, or Gene Machine to name a few. This version does not require downloading or installing Java3D, and has more modern GUI features.
siMacro is simple GUI tool for cell based genome wide siRNA screen data processing. It calculates statistical parameters such as Z score and robust Z score.
AppleScript Utilities for Working Quickly with the FASTA File
Written in Applescript, FASTApple is a suite of utilities for the average computational biologist that make working with FASTA files fast and easy. A basic and straightforward GUI makes choosing files a cinch.
Currently three utilities are included:
FASTA Concatenater combines multiple FASTA files into a single FASTA file.
FASTA Gene Concatenater strings the DNA sequences of each taxon in a set of pre-aligned FASTA files with identical taxa. Specifically designed to prepare RAxML analyses, it conveniently creates a partition file in addition to the concatenated file.
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