Showing 256 open source projects for "python windows ui"

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  • 1
    The igraph library

    The igraph library

    Library for creating and manipulating graphs

    This is a library for creating and manipulating graphs with focus on speedy operations for large, sparse graphs.
    Downloads: 1 This Week
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  • 2
    Application to create 'electronic fluorescent pictographic' representations of gene expression patterns. Created at the Provart lab of the department of Cell & Systems Biology, University of Toronto.
    Downloads: 0 This Week
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  • 3
    Syzygy is a toolkit for the analysis of targeted (pooled/individual) resequencing datasets.
    Downloads: 0 This Week
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  • 4

    SpiKeDeteKt

    An automatic spike detection program to be used with new KlustaKwik

    This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs...
    Downloads: 0 This Week
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  • 5
    Laboratory notebook using version control system and independent date-time stamping (as notarization), in order to ensure record accountability, auditing, and conforming to US FDA 21 CFR 21's rule on electronic records. Please kindly rate this application or drop me an email at [ mauriceling AT acm DOT org ] so that I can hear from you. Otherwise, I have no idea who the users are. Please kindly help.
    Downloads: 0 This Week
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  • 6
    The PyCogent project is moving to GitHub. When completed, you will find us at http://github.com/pycogent/pycogent/. You can find the PyCogent website at http://www.pycogent.org.
    Downloads: 0 This Week
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  • 7
    CoNIFER

    CoNIFER

    Homepage for CoNIFER (Copy Number Inference From Exome Reads)

    CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
    Downloads: 3 This Week
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  • 8
    Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
    Downloads: 0 This Week
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  • 9

    Pysimony

    A Pythonic Implementation of Parsimony Inference of Phylogeny

    UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An...
    Downloads: 0 This Week
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  • 10

    u/sbmv2012

    Taxonomy assignment of metazoans using a python based pipeline

    The aim of this project is to create an automated pipeline for taxonomic assignment of DNA sequences obtained from environmental samples. We develop a series of python scripts to process the raw sequence data obtained from benthic environmental samples and to taxonomical assignment of these sequences and finally to integrate all data in a relational database.
    Downloads: 0 This Week
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  • 11

    Primer Design Tool

    Design PCR primers

    A simple tool to design DNA primers for mutagenesis in BGME lab (JHU). Allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them.
    Downloads: 0 This Week
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  • 12
    GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
    Downloads: 1 This Week
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  • 13

    brocc

    BLAST Read and OTU Consensus Classifier

    NOW HOSTED ON GITHUB: https://github.com/kylebittinger/brocc Old releases are kept here for archival purposes.
    Downloads: 0 This Week
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  • 14
    The QIIME project has moved to GitHub. You can now find us at http://github.com/qiime/. As always, you can find the QIIME website at http://www.qiime.org.
    Downloads: 0 This Week
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  • 15
    QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
    Downloads: 0 This Week
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  • 16

    CancerVaccine

    In silico vaccination experiment to determine best vaccination schedul

    This project is a simplified representation of the main immune system cells and their interactions. The aim is to simulate the effect of the introduction of a cancer vaccine cell which would stimulate the immune response against the tumor-associated antigen, and consequently against cancer cells themselves. In vivo vaccination experiments take very long to complete, so it would be useful to simulate these experiments such that the best schedule of vaccination is determined that would result...
    Downloads: 0 This Week
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  • 17
    TRMSim-WSN
    TRMSim-WSN (Trust and Reputation Models Simulator for Wireless Sensor Networks) is a Java-based simulator aimed to test Trust and Reputation models for WSNs. It provides several Trust and Reputation models and new ones can be easily added.
    Downloads: 0 This Week
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  • 18

    metaProt

    Pipeline to analyze coding regions in metagenomic projects

    metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this.
    Downloads: 0 This Week
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  • 19

    cancer_dynamics

    Cancer Dynamics web

    Website that shows the dynamics of a tumor by solving a system of ordinary differential equations. The results are two kind of graph images, and a gif file, being all of them available for download as a compressed file.
    Downloads: 0 This Week
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  • 20
    Python module for manipulation of Crystallographic Information Framework (CIF) files
    Downloads: 0 This Week
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  • 21
    FlexGrePPS forms the foundation of a novel antigenic screening methodology that is based on the representation of an entire proteome by near-optimal degenerate peptide pools.
    Downloads: 0 This Week
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  • 22
    Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.
    Downloads: 0 This Week
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  • 23
    Downloads: 0 This Week
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  • 24
    We here present a novel computer algorithm, called AutoClickChem, capable of performing many click-chemistry reactions in silico. In silico modeling of click-chemistry products may prove useful in rational drug design and drug optimization.
    Downloads: 1 This Week
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  • 25
    Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
    Downloads: 1 This Week
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