Showing 5 open source projects for "web extract"

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    MView

    Extract and reformat a sequence database search or multiple alignment

    NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout.
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    Downloads: 12 This Week
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  • 2
    Ymap - Yeast Mapping Analysis Pipeline

    Ymap - Yeast Mapping Analysis Pipeline

    Pipeline for large-scale genome changes analysis of genome datasets.

    The active use repository has migrated over to: https://github.com/darrenabbey/ymap The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github. -------- Eukaryotic pathogens have complicated and dynamic genomes. To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of...
    Downloads: 0 This Week
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  • 3
    WhichGenes is a web-based bioinformatics tool. It allows the user to extract lists of genes from multiple sources in order to use them for further experiments.
    Downloads: 0 This Week
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  • 4
    Hermes provides institutions such as museums the ability to extract and publish biological collection information in formats such as DarwinCore (via TAPIRLink) and via MapServer.
    Downloads: 0 This Week
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  • 5
    danaides

    danaides

    Meta data extractor based on ontologies

    Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).
    Downloads: 0 This Week
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