Showing 3 open source projects for "support vector machine classifier"

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  • 1

    CRISPR-offinder-v1-2

    A CRISPR tool for user-defined protospacer adjacent motif

    ...Given an input FASTA file of the target sites and queries the reference genome as well as a CRISPR system with a defined spacer length and PAM sequence, this standalone tool will identify putative sites and assign a predicted activity based on support vector machine model which conducted by sgRNA Scorer 2.0. In addition, sgRNAs with minimal off-target activity were predicted by Cas-OFFinder, and score with Off-Target Cutting Frequency Determination (CFD).
    Downloads: 1 This Week
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  • 2

    SAMSVM

    A tool for misalignment filtration on SAM-format sequences with SVM

    Applying the LIBSVM, a package of support vector machine, SAMSVM was developed to correctly detect and filter the misaligned reads of SAM format. Such filtration can reduce false positives in alignment and the following variant analysis.
    Downloads: 0 This Week
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  • 3
    HIVM, An Application for Prediction of HIV Drug Resistance using Support Vector Machine Algorithms
    Downloads: 0 This Week
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