Showing 4 open source projects for "regular expression"

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  • 1

    MspJI-seq_pipeline1.0

    an pipeline for MspJI-digesting sequencing in DNA methylation study

    ...MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the open source program SOAP (Short Oligo Alignment Program), and mCNNR sites recognition is performed by regular expression in perl.
    Downloads: 0 This Week
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  • 2
    dna2abc turns DNA sequences into musical sequences. The key feature is the rule editor; a rule is a regular expression paired with a Tcl script. dna2abc scans a DNA sequence, testing each regular expression: if it matches, the Tcl script is run.
    Downloads: 0 This Week
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  • 3
    Cluster Search, a program for genome-wide regular expression pattern matching.
    Downloads: 0 This Week
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  • 4
    Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.
    Downloads: 2 This Week
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