Showing 4 open source projects for "pick"

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  • 1

    InMethyl

    Design of target-specific primers for bis. sequencing of CpG-islands

    ...InMethyl uses bowtie high-throughoutput aligner to identify potential mis-priming sites in the bisulfite treated or intact genome and then – undesirable potential PCR products. InMethyl provides a balance between various characteristics that allows to pick up primers in hard-to-study genomic regions. This balance is based on the calculation of scoring factor including primer pair specificity, nucleotide composition (sequence complexity), thermodynamic features (melting temperature, dimers dG etc.), presence of CpG-sites and other parameters. Users are intended to customize the desired or limit ranges of these values, as well as penalties for out-of-bounds values. ...
    Downloads: 0 This Week
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  • 2
    Blast2SNP
    The Blast2SNP is able to pick out synonymous, non-synonymous mutations and indels from draft assembly sequences by performing BLAST search against the reference ORF sequences.
    Downloads: 0 This Week
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  • 3
    The goal of Picklist Editor is to display and modify pick lists before spot picking (in proteomics).
    Downloads: 0 This Week
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  • 4
    FMR Eyetrack

    FMR Eyetrack

    SPM Plugin to estimate point of gaze from fMRI data (eyetracking)

    FMR Eyetrack is a SPM plugin that allows to directly estimate the point of gaze from the functional MRI data without the help of a dedicated eye tracker. I am no longer working in this field. If anyone wants to pick up this project, please contact me.
    Downloads: 0 This Week
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