Showing 10 open source projects for "numerical"

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  • 1
    Mendel’s Accountant
    Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
    Downloads: 0 This Week
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  • 2
    MLDSP-GUI
    An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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    Downloads: 2 This Week
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  • 3
    Community Detection Modularity Suite

    Community Detection Modularity Suite

    Suite of community detection algorithms based on Modularity

    ...The suite is based upon the fast community algorithm implemented by Aaron Clauset <aaron@cs.unm.edu>, Chris Moore, Mark Newman, and the R IGraph library Copyright (C) 2007 Gabor Csardi <csardi@rmki.kfki.hu>. It also makes of the classes available from Numerical Recipies 3rd Edition W. Press, S. Teukolsky, W. Vetterling, B. Flanne
    Downloads: 1 This Week
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  • 4

    erne

    ERNE - Extended Randomized Numerical alignEr

    We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners),
    Downloads: 27 This Week
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  • 5
    SBSI
    SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
    Downloads: 0 This Week
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  • 6
    Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
    Downloads: 0 This Week
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  • 7
    rNA is an aligner for short reads produced by Next Generation Sequencers
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  • 8
    The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network. Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
    Downloads: 0 This Week
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  • 9
    DASSGUI
    DASS-GUI is a graphical user interface for pattern search in non-sequential data.
    Downloads: 0 This Week
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  • 10
    A numerical library designed for n-dimensional image-processing written in Java.
    Downloads: 0 This Week
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