Showing 4 open source projects for "indexing"

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  • 1
    Bowtie 2

    Bowtie 2

    A fast and sensitive gapped read aligner

    Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. Bowtie 2 outputs...
    Downloads: 1 This Week
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  • 2
    A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
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    Downloads: 6 This Week
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  • 3
    SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging on experience from more than 20 years of information retrieval.
    Downloads: 0 This Week
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  • 4
    parallel bio-sequences indexing and searching library.
    Downloads: 0 This Week
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