Search Results for "java open source" - Page 84

PartiGene is a pipeline tool for the analysis of expressed sequence tag datasets. It integrates sequence base calling, sequence clustering, consensus building, and annotation, and delivers a relational database accessible through a web interface.

QGAMESS is a queuing program for the popular molecule mechnanics program GAMESS, the General Atomic and Molecular Electronic Structure System. QGAMESS is a cross-platform replacement for GTK-Gamess.

PNE provides an environment for modeling, simulating, and optimizing biological networks including regulatory and metabolic networks.

SDK of fingerprint preprocessing, feature extraction and feature matching.

A client side browser implementation of Tom Ray's Tierra Artificial Life simulator (http://en.wikipedia.org/wiki/Tierra_(computer_simulation)).

It is a Cross Language Interface Platform that allows different languages to call and execute functions of other languages using xml-rpc as the remote procedure call vehicle.

CTM, an acronym for Closure Task Manager, is a generic Web based project management system used to manage tasks and the project team for one or more genome finishing (Closure) projects.

The aim of postubuntu is to simplify and accelerate Ubuntu 8.04 post installation by installing automatically software chosen by tasks and proprietary software like googleearth, flashplayer or acrobat reader. It can also add NIS/NFS configuration.

FaceIn! is a face recognizing log in application for Linux. You will never have to enter your password anymore! Just show your face to your camera and let the system recognize you and take you to your desktop!

CC8Works is a Web-based software system for managing and documenting a cross of eight existing inbred mouse lines to yield hundreds to thousands of recombinant inbred lines that will become a permanent genetic resource for biomedical research.

Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.

Ducking is a software who is providing simulation of probable docking between two proteins using rigid body monte carlo method. It is written in python and uses the libraries wxPython, VTK, SciPy and BioPython.

In silico evolution of biochemical networks using a genetic algorithm combined with a rule-based biochemical network model.

BioEval, a web-based evaluation platform for one or multiple biomedical text extraction systems and the collaborative creation of gold standards. Handles evaluation of extraction of one to many related entities, plus supporting evidence and normalization

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments, in an automatic way or drive by users.

A web based tool that combines automatic extraction of gene and protein entities with manual curation done by the researchers who read and write the biomedical texts. The interface is loaded in web browser extensions and viewed along with the abstract.

CImmerSys is a project for make an specific supervisory and control software for controlling all the devices of a Temporary Immersion System for vitro plants production.

soaPDB is a clean way to Search, Organize, and get e-mail Alerts for saved PDB (Protein Data Bank) queries

PubMed Central browser. Source code: http://github.com/dualword/dualword-pmc/

LaboLIM is a laboratory information system aimed at microbiology laboratories. It is licensed under the GPL V3.0. It is written in PHP and currently uses SQLite 2.1, but could be converted to MySQL. It was partially developed with a working micro lab. Looking for some people to chip in and make it a nice project.

This project seeks to integrate knowledge, methods and data from various disciplines through the design and implementation of a system that allows for communications between languages and different platforms.

Python program devoted to study the relationship between cells during inmune response. It is based on a 3D periodic boundary conditions grid where cells see each other and react according to certain movement, growth and interaction rules.

The HealthQuilt project is a collection of Health Information tools released by the HealthQuilt team. This tools include CCR tools, as well as tools to improve the quality and coordination of healthcare.

trimAl can consider several parameters, alone or in multiple combinations, in order to select the most-reliable positions in the alignment. These include the proportion of sequences with a gap, the level of residue similarity and, if several alignments for the same set of sequences are provided, the consistency level of columns among alignments. Moreover, trimAl allows to manually select a set of columns and sequences to be removed from the alignment. trimAl implements a series of...