Showing 2101 open source projects for "java open source"

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  • 1
    Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
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  • 2
    Software and systems that currently support the data processing, annotation and Genbank submission pipelines for viral projects at JCVI.
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  • 3
    Biom is an open source project related to bioinformatics. Biom is started for needs of university project related to statistics for Sars corona virus. It can work with any genome sequence, nucleo or amino.
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  • 4
    The Helmholtz Open Bioinformatics Technology (HOBIT) aims to improve the interconnection of bioinformatic resources based on Web Services and community standards for data representation to facilitate open exchange of biological information.
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  • 5
    SB:M/O is a cross-platform toolbox for systems biology. It fully supports both Matlab and the open source alternative, Octave. The aim is to make it easy for the systems biology community to develop new, portable systems biology solutions.
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  • 6
    Project provides some Tcl/Tk procedure for manipulating Biology data. And, attributed to the clarity of the Tcl code, it is also useful for education.
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  • 7
    The bio-cpp project provides a C/C++ library for bioinformatics.
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  • 8
    Find sweeps using Hidden Markov models using a Matlab package
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  • 9

    malty_DEPRECATED

    translates alignments of A-to-B and B-to-C to A-to-C; has BAM support

    Development moved to: https://bitbucket.org/rongchenlab/malty Docs moved to: http://malty.readthedocs.org/en/latest/
    Downloads: 0 This Week
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  • Grafana: The open and composable observability platform Icon
    Grafana: The open and composable observability platform

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  • 10

    cafetiere

    Rule-based information extraction.

    UIMA-compliant text analytics using a rule language in which to express context-sensitive constraints on syntactic and semantic text elements.
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  • 11
    parallel bio-sequences indexing and searching library.
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  • 12
    'torungmx' is a script to help you running Gromacs
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  • 13
    The open bicycle computer (oBiCo) is an outdoor computer to be mounted on your bike. We are providing an open source based plattform to ether use Linux based software or go with a small GPL'ed C++ OS (Booting in just 2 seconds)
    Downloads: 0 This Week
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  • 14
    Genome Wide Analysis Tools
    This collection of tools written in C++ with the STL library provides the basic building blocks to develop complex analysis pipelines on genomic coordinates.
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  • 15
    childsafelinux aimes to be an easy to use and fast configuration tool to prevent children from seeing adult or illigal content through an internet/tcpip connection.
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  • 16
    generic makefiles for use in bioinformatics
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  • 17
    CCPNGrid is a Plone add-on to create a web portal which intends to provide the scientific NMR community with the means to process, analyse and execute advanced 3D-structure calculation and validation software all in a straightforward and simple way.
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  • 18
    Python script for Recoord Project (http://www.ebi.ac.uk/msd-srv/docs/NMR/recoord/main.html). It uses Condor and Parallel Python.
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  • 19
    AssemblyViewer is a feature-rich web viewer to display assembly/contig information that facilitates genome finishing.
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  • 20
    AQUA is a suite of programs for Analyzing the QUAlity of biomolecular structures that were determined via NMR spectroscopy. AQUA was developed by Ton Rullmann and Jurgen Doreleijers in the NMR Spectroscopy Department, Utrecht.
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  • 21
    The aim of our programm is to help lab on counting species and analyze the results with statistics tools.
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  • 22
    The SBMLevolver is an evolutionary algorithm package that creates SBML models with user-specified properties and behaviour from a given set of building blocks. Applications lie in network reconstruction and synthetic biology.
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  • 23

    Paired Sequence File Comparison

    Fast validation of FASTQ files containing paired-end reads

    For a summary and user's guide, please see the Wiki page: https://sourceforge.net/p/psfc/wiki/Home/ The Wiki page can also be accessed via the top toolbar.
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  • 24
    Model that permits to simulate the plant differentiation processes.
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  • 25
    The platestats software aims to provide a convenient solution for analyzing the results of biological assays performed in 96- and 384-well plates.
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