Showing 2101 open source projects for "java open source"

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  • 1
    jrgp is a strong-typed Genetic Programming system, which features a graphical interface (gool) to setup and run GP-problems and a tool (fs-d) that greatly simplifies the definition of a GP-problem.
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  • 2
    HalX is a LIMS (Laboratory Information Management System). It is meant to be able to keep track of all the experimental details of any type of biochemical, molecular biology or structural biology experiment (but not all are available now...)
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  • 3
    Finds conserved regions in the aminoacid sequences of proteins by looking at multiple sequences of a protein family. Also allows comparison between user-defined groups of protein sequences.
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  • 4
    RmscopII is a Tcl/Tk script responsible to redirect protein structure files (PDB files) or RasMol scripts to multiple RasMol sessions. It can be used as a web browser helper application or as a standalone program.
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  • 5
    BASE is a database server to manage (locally) the massive amounts of data generated by microarray analysis. It handles biomaterials, raw data and images, and provides integrated and plug-in-able normalization, data viewing and analysis tools.
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  • 6
    OLIGOMAP is a tool to help researchers engineer restriction sites into oligonucleotides using silent mutagenesis and reverse translation algorithms.
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  • 7
    NOMAD is a system for supporting microarray experiments. it facilitates the archival and retrieval of experiment results, and is being developed to provide integrated analytical tools.
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  • 8
    MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition A genetic algorithm for generating SNP tiling paths from a large SNP database based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks): Hubley R., Zitzler
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  • 9
    Surviving bots is continuous software application in Java that will guide robots to search for energy source around it, tap it and explore ahead for survival and thus evolve into much more advance system.Software is ment to be hardware independent.
    Downloads: 0 This Week
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  • 10
    Two Dimensional NOesy simulation (TDN) implementents an algorithm that creates a time-domain 2D NOesy spectrum. TDN does not calculated the nOe peak intensities, Therefore, you will need the CORMA (Complete nuclear Overhauser Relaxation Matrices).
    Downloads: 0 This Week
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  • 11
    A project to develop a web-based tool to run Delphi method studies. The project is primarily written in PHP using MySQL as a backend.
    Downloads: 0 This Week
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  • 12
    ĄHola!, for "Hordes of Little Atoms," is a project to develop a lean, modular, scalable toolkit for massive simulations of particle (molecular) dynamics. It is written in C and Python to get the best balance between programmer and run time.
    Downloads: 0 This Week
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  • 13
    This project aims at creating a program that modelises an idiotypic network. This is a biological phenomenon in the immune system. We want to see how thing will behave by using a graphical library.
    Downloads: 0 This Week
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  • 14
    A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.
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  • 15
    A python library for handling and analyzing biological sequence annotations as described in GFF files (General Feature Format). The library is intended to be a complete framework for this file format.
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  • 16
    Universal java component to display content and structure of the XML document. Bioinformatics.
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  • 17
    EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles.
    Downloads: 0 This Week
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  • 18
    The Molecular Modeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily extended and modified to perform Monte Carlo and molecular dynamics simulations.
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  • 19
    A modular, database-backed system for 5 dimensional (5D) analytical biological microscopy and cell-based screening. Please note - we have moved. Please come visit us and download from our new site at http://cvs.openmicroscopy.org.uk
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  • 20
    Le projet eflore, porte par l'association tela-botanica (http://www.tela-botanica.org), a pour but d'etablir les structures d'informations necessaires ŕ l'etablissement d'une flore electronique et de developper les outils informatiques les exploitant.
    Downloads: 0 This Week
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  • 21
    Info Sapient will be an Open Source, Common License 0.5, 100% Pure Java based program that is a mechanism for the expression and execution of business rules.
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  • 22
    Virtual machine/emulator; "holding pen" for self-replicating programs written in custom RISC assembly-like language, evolving via random point mutations and periodic fitness-based cullings. Inspired (like Avida) by Thomas Ray's alife simulator, Tierra
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  • 23
    Featurama, superceding ProbePicker, is a bioinformatics program used to generate short probes from large datasets for use in DNA microarray experiments. A new project, BioSap, will extend the functionality of featurama.
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  • 24
    Discovery Manager for integrating components on CSF.
    Downloads: 0 This Week
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  • 25
    BioSap-Blast Integrated Oligonucleotide Selection Accelerator Package. BioSap selects unique oligos for microarrays by detecting user-defined parameters and running parallel instances of Featurama and Blast on compute engines, producing xml output files.
    Downloads: 0 This Week
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