Showing 2101 open source projects for "java open source"

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  • 1
    The JefNET (Java Evolutionary Framework Network) Proj. consists of three subprojects: JEF, Dna, JXTAJef. Our intent is to provide a distributed genetic programming framework for the Java language, and a network in which classes can spontaneously evolve.
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  • 2
    sibsim is designed to simulate either genotype and/or quantitative phenotype data in family structures in a modern, easy to use and highly scaleable way. sibsim is based on XML, completely written in C++ and published under the GNU General Public License
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  • 3
    Fast-DCM (Fast-DynamicCausalModelling) is an open-source addon for the SPM5 toolbox (http://www.fil.ion.ucl.ac.uk/spm/software/spm5/). It accelerates the estimation of Dynamic Causal Models.
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  • 4
    GEDAS is a software to perform microarray data analysis with friendly user interface and convenient data display. Currently some commonly used data clustering algorithms have been implemented in this software.
    Downloads: 1 This Week
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  • 5
    DrPangloss is a python implementation of a three operator genetic algorithm, complete with a java swing GUI for running the GA and visualising performance, generation by generation
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  • 6
    SyntenyMiner provides a user interface to navigate matches between multiple genome sequences.
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  • 7
    mySQL db app that stores chemical structures, calc. descriptors and property values. It has a descriptor calculator and a method that filters descriptors correlated with property values. Easy to plug-in your descriptor calc. Ideal for QSAR specialists!
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  • 8
    The field representation projectis based on the Field Representation Language (FRL) and associated tools. Primarily this means the Abstract Field Layer (AFL) - a C++ API for reading, manipulating and writing FRL files.
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  • 9
    The Canopy project is an initiative to merge and expand the functionality of Perl-speaks-NONMEM (PsN), Census, Xpose and PopED. The goal is to produce a coherent, inclusive and convenient platform for pharmacometric data analysis.
    Downloads: 0 This Week
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  • 10
    BioDOM is a JAVA library for easy creation of XML files according to simple XML schemas for describing biological data. It can also be used to convert other commonly used biological (possibly non-)XML data into these new formats.
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  • 11
    Sehr Gut Libs (sglibs) is a set of utility libraries for general and scientific programming. It includes stack and string manipulation, CGI I/O, config file parsing, and sequence-processing for molecular biology.
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  • 12
    MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
    Downloads: 0 This Week
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  • 13
    When planning heterologous expression of a gene, it is necessary to assess the number of rare codons that can be encountered in the gene. This program helps you find out.
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  • 14
    EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl and is exceedingly simple to install, configure, maintain and use.
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    Downloads: 10 This Week
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  • 15
    Experimental Lindenmayer System generator, in 3D using OpenGL. Used for modeling the fractal growth processes of plants.
    Downloads: 0 This Week
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  • 16
    TaxonDNA is a simple but extensible system for performing simple DNA (and other) sequence manipulations in Java. We hope to create a simple framework which can be quickly extended to create bioinformatics applications.
    Downloads: 2 This Week
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  • 17
    Sourcer-E is a software for use in Genectic Biology research. Starting from the information collected by the field researcher about on the species contact zone it calculates the center and the width of the hybird zone.
    Downloads: 0 This Week
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  • 18
    Random Genome Sequence Downloader.
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  • 19
    Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.
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  • 20
    DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.
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  • 21
    Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Life Science applications, and server software, for Industry data providers.
    Downloads: 1 This Week
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  • 22
    Cyclone aims at facilitating the use of BioCyc, a biological pathway tool. Cyclone provides a comprehensive library of Java classes.
    Downloads: 0 This Week
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  • 23
    OpenCare is an easy-to-use, feature-rich, extremely expandable, research-oriented Electronic Medical / Health Record System (EMR/EHR) written in PHP currently using MySQL as a backend.
    Downloads: 1 This Week
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  • 24
    2-D chemical structure drawing program
    Downloads: 0 This Week
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  • 25
    GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics research.
    Downloads: 0 This Week
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