Showing 2101 open source projects for "java open source"

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  • 1
    Perl Microarray toolkit, providing object-oriented methods for the manipulation, management and analysis of microarray data.
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  • 2
    The Short Read Analysis Toolkit contains a number of useful tools to analyze data from ChIP-Seq and other experiments producing short sequence reads.
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  • 3
    Artificial plants laboratory.
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  • 4
    EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.
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  • 5
    IGBM (Identification of gene blocks in microorganisms) implements a BLAST-like method to infer conserved gene clusters among closely related prokaryotes, and provides a graphical user interface to navigate the identified clusters and their annotated info
    Downloads: 5 This Week
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  • 6
    Graphical interface for ModelTest and MrModelTest written in Python, for Windows, Linux and Mac OSX
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  • 7
    The ONTO-SPARQL library contains sparql-queries for loading OBO-ontologies, and for browsing and searching through them. The results of the queries are returned in XML or a HTML-interface. They can be used by end-users and programmers.
    Downloads: 0 This Week
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  • 8
    Biospha is a suite of perl scripts based on bioperl toolkit intended to help researches to manage large sequence file. With BIOSPHA you can classify each sequence according to the NCBI taxonomy. You also can get all taxonomic info from a GI or Taxid.
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  • 9
    Our program is made to integrate, analyze and display biological datas typed by the user, such as chemical reactions networks.
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  • 10
    This is a mathematical/informatical/biologocal aproach to System-research. The aim is to write a progrramm that simulates a world with as many mathematical methods as possible at once.
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  • 11
    Automated identification of complex post translational modifications by mass spectrometry
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  • 12
    TACS (Trust Ant Colony System) is a Trust model for P2P, Ad-hoc and Wireless Sensor networks (also valid for multi-agent systems) based on the bio-inspired algorithm ACS (Ant Colony System).
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  • 13
    Here is a repository of libraries automatically generated by Patlac::Xml2cpp software. All of these libraries are c++ translation of their respective xsd schema. They include classes with accessors, saxparser with iteration mode and xml serialization.
    Downloads: 0 This Week
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  • 14
    Genomic assembly manipulation toolkit.
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  • 15
    This is a computer model to study Evo-devo. It is the software of a project described in PLoS Computational Biology.
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  • 16
    An open source, free DIY biotech/biohacking bootstrapping kit. Genetic engineering/therapy, BioBricks, synthetic biology - schematics, tutorials, etc.
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  • 17
    jTerm is a light-weight platform independent vocabulary/terminology server. It support multiple terminologies using an abstract model. The system is provided as a J2EE deployable application supporting a web frontend for navigation of the terminologies.
    Downloads: 0 This Week
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  • 18
    Large set of functions for biological records (ECG, EEG, phono), datastore, datamining and analysis (HRV, QT, RR, ST). The application is written in Java, so that it is assumed to work on all devices. It runs as a desktop or client-server application. It
    Downloads: 0 This Week
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  • 19
    Parallel IBDWS is an upgrade from IBDWS that utilizes parallel processing. Also, the incorporation of DNA sequence data has been added since the last code release
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  • 20
    Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein interactions. It strives to provide a comprehensive resource of Protein-Protein interactions for all major species.
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  • 21
    Cell Electrophysiology Simulation Environment (CESE)
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  • 22
    The BioArray Software Environment (BASE) v1.2 is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. PrognoChip-BASE extends BASE v1.2.16, providing more functionalities.
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  • 23
    A web-based groupware application for Linux with PHP, MySQL, Apache, SSL oriented to forensic laboratories. Applicazione scritta per Linux con PHP, MySQL, Apache, SSL, finalizzata alla condivisione di dati nei laboratori forensi.
    Downloads: 0 This Week
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  • 24
    EuroPhenome - a database for Mouse phenotype data
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  • 25
    WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.
    Downloads: 0 This Week
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