Showing 2101 open source projects for "java open source"

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  • 1
    GTdb - Modular genotype database for all markers. The database has core which captures information common to different variation measurements and extensions to method and instrument specific data.
    Downloads: 0 This Week
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  • 2
    SISSIz is a program for randomizing multiple sequence alignments preserving dinucleotide content. It can be used as a control strategy for comparative noncoding RNA gene prediction programs and as a standalone RNA gene finder.
    Downloads: 0 This Week
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  • 3
    ChemCpp is a C++ toolbox for chemoinformatics focusing on the computation of kernel functions between chemical compounds. Together with Support Vector Machines, these kernel functions find natural applications for virtual screening of molecules.
    Downloads: 0 This Week
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  • 4
    Praxiteles is a cross-platform interactive visualization tool for comparative genome map data. It is particularly well-suited to viewing multiple related genomes or chromosome segments that have highly diverged gene content and order.
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  • 5

    OpenEEG - EEG hardware and software

    The OpenEEG project is about creating a low cost EEG device

    Working hardware has been built and is in a late beta stage. Software is also available.
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    Downloads: 4 This Week
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  • 6
    Venndiagram comparison for ProteinExperiments in the PRIDE Database
    Downloads: 0 This Week
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  • 7
    ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
    Downloads: 0 This Week
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  • 8
    Referent Tracking (RT) is a novel approach to store data in electronic (health) records by referring to real world entities by means of a unique ID. The RT System is a back-end that uses RDF as a representation, but adds to it a referential semantics.
    Downloads: 0 This Week
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  • 9
    XAS is a software with graphical user interface to performan analysis of data generated by a high-throughput expression cloning technology using gene expression microarrays.
    Downloads: 0 This Week
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  • 10
    Minimum Information About a Cellular Assay project
    Downloads: 2 This Week
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  • 11
    biodivDP is a web application that can be used for accumulation and dissemination of, but not limited to, biodiversity and taxonomy specific data.
    Downloads: 0 This Week
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  • 12
    PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.
    Downloads: 0 This Week
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  • 13
    PubMode is an Emacs extension that allows to search and retrieve bibliographic data from the PubMed database of biomedical literature. It is designed to integrate seamlessly with LaTeX/BibTeX in the process of creating scientific publications.
    Downloads: 0 This Week
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  • 14
    CLIMS is a Laboratory Information Management System for protein Crystallography that features a novel graphical interface to a relational database. CLIMS has been reviewed as one of the top two LIMS for crystallographers by CCP4.
    Downloads: 0 This Week
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  • 15
    Geneview is a visualisation tool to display genetic sequence data stored in nucleic sequence databases like <A HREF="http://www.ncbi.nlm.nih.gov/Genbank/">GenBank</A>.
    Downloads: 0 This Week
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  • 16
    SRF (Sequence Read Format) is used to store DNA sequence data.
    Downloads: 0 This Week
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  • 17
    The Systems Biology Research Tool (SBRT) is both an application and an application programming interface (API) intended to facilitate the computational aspects of systems biology.
    Downloads: 0 This Week
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  • 18
    GRIP is a clinical decision support system for controlling glucose levels in critically ill patients. GRIP may replace paper-based protocols for intensive insulin therapy and can use arbitrary complex rules to advise nurses on insulin doses.
    Downloads: 0 This Week
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  • 19
    perl command line tool for carrying out simple bootstrap t-tests on microarray data
    Downloads: 0 This Week
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  • 20
    This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TMA) images
    Downloads: 0 This Week
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  • 21
    HaploGeneMapper is a tool to visualise the genomic proximity of haploinsufficient genes to segmental duplications on a chromosome-by-chromosome basis.
    Downloads: 0 This Week
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  • 22
    The metabolomics standards initiative (msi) will develop a Core Information for Metabolomics Reporting (CIMR) recommendation and a more formal and semantically defined corresponding ontology (msi-ontology).
    Downloads: 0 This Week
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  • 23
    MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
    Downloads: 0 This Week
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  • 24
    Discrete Event System Specification (DEVS) combined with System Biology Markup Language (SBML) project: a Java-based tool to solve complex biology processes. Support by RTSync Corporation and Arizona Center for Integrated Modeling & Simulation (ACIMS)
    Downloads: 0 This Week
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  • 25
    The ExactFDR software package is an improvement of permutation-based False Discovery Rate (FDR) estimation methods that takes advantage from exact p-value computations for analyzing Genome-wide association studies data
    Downloads: 0 This Week
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