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The goal of the GeneJock Project is to produce an Open Source DNA sequence editor that is cross-platform, full featured and extensible. A second goal (which may become more important), is the development of a C++ library for biological data manipulation.
http://www.princeton.edu:80/pr/pwb/01/0326/1b.shtml
http://www.cs.princeton.edu/immsim/
Immsim is an immune system simulation used by Immunology students and researchers. Currently it is being used at Princeton University.
Distributed Genetic Programming SRVM
(Simple Risc Virtual Machine)
Distributed function approximator of nonlinear functions with automatic induction of machine code.
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DSIM means "darwin_sim".
DSIM is a project under GPL. DSIM tries to simulate the Darwin theory, by by generating entities, having some characteristics.
Those entities belongs to one of the 6 species of the program.
Each species has some properties a
DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
This package is intended to control dilutions of proteins / lipids / detergents mixtures in a reproducible, easy and even fun way in order to produce protein cristals.
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A software framework to support distributed evolutionary software development. It dynamically creates a network of nodes that can run a pre-distributed sourcecode (e.g. artificial lifeforms). The results of the calculation will be sent back to the maste
The open bicycle computer (oBiCo) is an outdoor computer to be mounted on your bike. We are providing an open source based plattform to ether use Linux based software or go with a small GPL'ed C++ OS (Booting in just 2 seconds)
This collection of tools written in C++ with the STL library provides the basic building blocks to develop complex analysis pipelines on genomic coordinates.
Biom is an open source project related to bioinformatics. Biom is started for needs of university project related to statistics for Sars corona virus. It can work with any genome sequence, nucleo or amino.
Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
AQUA is a suite of programs for Analyzing the QUAlity of biomolecular structures that were determined via NMR spectroscopy. AQUA was developed by Ton Rullmann and Jurgen Doreleijers in the NMR Spectroscopy Department, Utrecht.
The program fuses 2 sets of molecules. It tries different relative positions of molecules before binding them, so that there is no or minimal intersection in the resulting molecule. The atom to be fused in a molecule is labeled with an R symbol.
The SBMLevolver is an evolutionary algorithm package that creates SBML models with user-specified properties and behaviour from a given set of building blocks. Applications lie in network reconstruction and synthetic biology.
Fast validation of FASTQ files containing paired-end reads
For a summary and user's guide, please see the Wiki page:
https://sourceforge.net/p/psfc/wiki/Home/
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