Showing 379 open source projects for "python linux"

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  • 1
    Course Project
    Downloads: 0 This Week
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  • 2
    Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
    Downloads: 4 This Week
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  • 3
    FONZIE
    FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra
    Downloads: 0 This Week
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  • 4
    A lightweight python LIMS system
    Downloads: 0 This Week
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  • 5
    Text2Genome is a set of scripts to extract nucleotide sequences from scientific articles and to map them to genomes and genes using a local alignment algorithm (BLAST/BLAT)
    Downloads: 0 This Week
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  • 6
    Metmask has moved to github http://github.com/hredestig/metmask Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.
    Downloads: 1 This Week
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  • 7
    Fasta<>Multifasta
    These scripts written in Python allow you to convert fasta files into multifasta file and vice versa.
    Downloads: 0 This Week
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  • 8
    bni-tools
    --UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE-- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
    Downloads: 1 This Week
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  • 9
    Phylogenetic Representativeness is a method for estimating adequacy of taxon sampling for phylogenetic studies. Through a series of statistics generated by PhyRe, it is possible to evaluate taxon coverage within a given group.
    Downloads: 0 This Week
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  • 10
    MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.
    Downloads: 0 This Week
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  • 11
    qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
    Downloads: 0 This Week
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  • 12
    Downloads: 0 This Week
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  • 13
    SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and share code that is common to many tasks and programs.
    Downloads: 0 This Week
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  • 14
    RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.
    Downloads: 0 This Week
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  • 15
    A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
    Downloads: 0 This Week
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  • 16
    A python/C++ framework for Bayesian phylogenetic analysis.
    Downloads: 0 This Week
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  • 17
    A set of bioinformatics tools for the open source bio-informatics platform "birch"
    Downloads: 0 This Week
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  • 18
    SINAM -- Simulation Interface for Network Analysis of Metabolism
    Downloads: 0 This Week
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  • 19
    A collection of python classes for computational ecology and evolutionary biology.
    Downloads: 0 This Week
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  • 20
    A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.
    Downloads: 3 This Week
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  • 21
    PTools
    PTools : a C++/Python library for macromolecular docking
    Downloads: 0 This Week
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  • 22
    The C Protein Folding Library is a minimalistic, high-performance modular library of C functions and data structures for computing folding simulations of proteins on a wide variety of computer hardware.
    Downloads: 0 This Week
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  • 23
    DANGLE: A Bayesian inferential prediction method for protein backbone dihedral angles and secondary structure assignments, solely from sequence information, experimental chemical shifts and a database of known protein structures and their shifts.
    Downloads: 0 This Week
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  • 24
    Inter University Multi-Modal Imaging
    Downloads: 0 This Week
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  • 25
    BARNACLE
    BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
    Downloads: 2 This Week
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