Showing 20 open source projects for "java implementation loader"

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  • 1
    GroIMP

    GroIMP

    Growth-grammar related Interactive Modelling Platform

    ... can interactively select the rules to be applied. GroIMP provides classes that can be used in modelling: Turtle commands, further geometrical classes like bicubic surfaces, the class Cell which has been used in the Game Of Life implementation, and so on. The outcome of a model is visualised within GroIMP. In the visual representation of the model output, users can i
    Downloads: 9 This Week
    Last Update:
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  • 2

    JFASTA

    Java implementation for the FASTA file format.

    JFASTA is a lightweight framework for handling FASTA files. It supports reading, writing and parsing of single- or multi-FASTA files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 6 This Week
    Last Update:
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  • 3

    JMGF

    Java implementation for the Mascot Generic File Format (MGF).

    JMGF is a lightweight framework for handling MGF files. It supports reading, writing and parsing of MGF files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 1 This Week
    Last Update:
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  • 4
    Open Source project for the development of the IEEE 11073-20601 reference implementation.
    Downloads: 0 This Week
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  • 5
    PixLib
    This library aims to provide support for D-dimensional images in Java and to enable high-level implementation of algorithms in dimensionally-invariant manner. Major features: the dimensionality and the access to primitive data types are abstracted.
    Downloads: 0 This Week
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  • 6

    bioluminescence

    A java library for polymorphic genome assembly.

    Bioluminescence is a java library for facilitating de novo genome assembly in the context of reads sampled from a single highly-polymorphic diploid individual. Bioluminescence implements a novel algorithm which uses an artificial neural network to classify contigs in a genome assembly as haplotype-specific or not-haplotype-specific. It then uses this information to partition the original input read set into two subsets, each of which has been enriched for one of the haplotypes. Initial results...
    Downloads: 0 This Week
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  • 7
    IDL specified API for manipulating and processing CellML 1.0 and 1.1. Includes C++ implementation. Accessible from a C++ program, or from any language for which a CORBA language mapping is available Also, a Java wrapper of the API is available.
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    Downloads: 2 This Week
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  • 8

    Fylogenetica

    Constructing level-1-networks consistent with a set of quartets

    This project is an implementation of an algorithm by J. Keijsper and R. Pendavingh. The goal of the algorithm is to construct a phylogenetic level-1-network that is consistent with a given set of quartets.
    Downloads: 1 This Week
    Last Update:
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  • 9
    Based on HL7 v.2.3.1 Orders & Results Reference Information Model (RIM)s, The project is NOT a CPOE per-se. Instead, the project provides "applications" that allow EHR's to perform Outpatient Orders and Results via HIE, and collect these into their EHRs to feed the EHR "CPOE module / section" (ex. with prescribed drugs, ordered labs and results, ....) The first module in the project was the "ePrescribing application"; certified by RxHub and SureScripts back in 2007. New implementation...
    Downloads: 0 This Week
    Last Update:
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  • 10
    An api for domain level interaction with SNOMED CT and an implementation based on a storage engine using a native SNOMED distribution stored in neo4j as a backend.
    Downloads: 0 This Week
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  • 11

    JGBParser

    jgbparser, gbk parser, genbank parser, bioinformatics

    We present an alternative library for development of bioinformatics Java applications. a Java implementation of JGBParser was built. It consists in a library, able to analyze text files in the GenBank Flatfile (GBF) format.
    Downloads: 0 This Week
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  • 12
    This is a reference implementation of snoBAC, a Bayesian Classifier designed to predict box H/ACA snoRNAs in Caenorhabditis nematode genomes. For details of algorithm and data, see Wang and Ruvinsky (2009) RNA in press.
    Downloads: 1 This Week
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  • 13
    Decima is a database that was designed to support time-series data mining. It consists of PostgreSQL custom type definition, implementation of GiST index for that type and snowflake database schema.
    Downloads: 0 This Week
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  • 14
    XMPP Web Services for Java (XWS4J) is an implementation of machine to machine communication over XMPP. The communicated content is encoded in XML, according to customized definitions of input and output in W3C XML Schemata.
    Downloads: 1 This Week
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  • 15
    DrPangloss is a python implementation of a three operator genetic algorithm, complete with a java swing GUI for running the GA and visualising performance, generation by generation
    Downloads: 0 This Week
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  • 16
    JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
    Downloads: 2 This Week
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  • 17
    MooN is a free software tool that provides a fast heuristic and problem implementation framework in form of plugins.
    Downloads: 0 This Week
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  • 18
    Anthill is a framework to support the design, implementation and evaluation of P2P applications based on ideas such as multi-agent and evolutionary programming borrowed from the complex adaptive systems area.
    Downloads: 0 This Week
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  • 19
    The ultimate goal of this project is to create a Java based DNA viewer that is both flexible and extendable. The initial phase will involve the design and implementation of a framework that can be used either with this project or other similar projects.
    Downloads: 0 This Week
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  • 20
    A straight-forward Java implementation of a mixture model with pluggable mixture functions, e.g. a mixture of Gaussian functions. The number and dimensionality of the mixture functions is not limited. All critical calculations are performed in log-space.
    Downloads: 0 This Week
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