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Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737.
We will create index for you if you tell us your interested species (j.an@qut.edu.au).
download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files"
please find miRPlant in sourceforge for plant miRNA prediction.
The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics
Jenetics is an advanced GeneticAlgorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize or maximize the given fitness function without tweaking it. ...
Framework for using the Genetic Algorithms optimization heuristic.
GeneticAlgorithms is a simple and lightweight framework to implement an optimization heuristic following the Genetic Algorithms model. A geneticalgorithm mimics the natural processes of evolution, selection and "survival of the fittest". This framework is intuitive and good integrated with Java 1.5 SDK and later.
Login to Websites Automatically Using Your Face as Password
...In face localization, the task is to find the locations and sizes of a known number of faces (usually one). In face detection, one does not have this additional information. Face detection is mostly used along with facial recognition feature to extract faces out of an image or video feed and identify the faces against a set of stored images. This feature can be used for tracking prisoners, attendance and signing in to user accounts. The Viola - Jones Algorithm presents a novel face detection technique, we would implement this technique for face detection and then use eigen faces method to recognize the person in the image. ...
Darwin 2: Java Framework for Evolutionary Computation (geneticalgorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
Shape is a molecular conformation prediction program. It uses a geneticalgorithm to efficiently search the conformational space of a biomolecule and then clusters the results. It is very simple to use.
Java API for implementing any kind of GeneticAlgorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
DrPangloss is a python implementation of a three operator geneticalgorithm, complete with a java swing GUI for running the GA and visualising performance, generation by generation
Molevolve is a Java library for running a GeneticAlgorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
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IslandEv distributes a GeneticAlgorithm (like <a href="/projects/jaga">JaGa</a>) across a network (see <a href="/projects/distrit">DistrIT</a>) using an island based coevolutionary model in which neighbouring islands swap migrating individuals every
MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition
A geneticalgorithm for generating SNP tiling paths from a large SNP database
based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):
Hubley R., Zitzler