Showing 360 open source projects for "java class diagram"

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  • 1
    JRasterCreator allows you to easily & visually build a raster file for the mass spectrometry instrument Bruker Daltonics MS ultraflex II by clicking on various spots/locations.
    Downloads: 0 This Week
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  • 2
    A small java API library for running the MM3 molecular mechanics package from within a java environment. It does not include MM3, nor implement MM3. The MM3 binaries have to be available on the user system.
    Downloads: 0 This Week
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  • 3
    CILib is a framework for developing Computational Intelligence software in swarm intelligence, evolutionary computing, neural networks, artificial immune systems, fuzzy logic and robotics.
    Downloads: 2 This Week
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  • 4
    This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
    Downloads: 0 This Week
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  • 5
    Decima is a database that was designed to support time-series data mining. It consists of PostgreSQL custom type definition, implementation of GiST index for that type and snowflake database schema.
    Downloads: 0 This Week
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  • 6
    Shape is a molecular conformation prediction program. It uses a genetic algorithm to efficiently search the conformational space of a biomolecule and then clusters the results. It is very simple to use.
    Downloads: 1 This Week
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  • 7
    jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.
    Downloads: 0 This Week
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  • 8
    JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
    Downloads: 6 This Week
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  • 9
    XMPP Web Services for Java (XWS4J) is an implementation of machine to machine communication over XMPP. The communicated content is encoded in XML, according to customized definitions of input and output in W3C XML Schemata.
    Downloads: 1 This Week
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  • 10
    Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
    Downloads: 0 This Week
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  • 11
    Meredys (MEsoscopic REaction DYnamics Simulator) is a particle based stochastic simulation software designed to model and simulate reaction-diffusion systems. (http://www.ebi.ac.uk/compneur-srv/meredys.html)
    Downloads: 0 This Week
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  • 12
    The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.
    Downloads: 4 This Week
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  • 13
    FreeLIMS  |  Free LIMS

    FreeLIMS | Free LIMS

    Laboratory Information Management System

    FreeLIMS is a Laboratory Information Management System ( LIMS ). Manage samples; create sample types from methods & parameters; easily generate reports & certificates; fine tune user rights. FreeLIMS is Open Source and Free.
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    Downloads: 39 This Week
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  • 14
    Java API for implementing any kind of Genetic Algorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
    Downloads: 0 This Week
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  • 15
    PedGMDR is GMDR's twin project.
    Downloads: 0 This Week
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  • 16
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
    Downloads: 4 This Week
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  • 17
    NOTE: please refer to OPPL 2. OPPL is a preprocessor language that allows users to define macros for altering OWL ontologies. The syntax is very simple and intuitive, offering a very abstract and high level "scripting" language, for example for int
    Downloads: 0 This Week
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  • 18
    Genome Data Visualization Toolkit (GDVTK) is a Java library for building bioinformatics visualization application. See Bioinformatics, 2004 Mar 22;20(5):727-34. Java-based application framework for visualization of gene regulatory region annotations.
    Downloads: 0 This Week
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  • 19
    Submission tool for Microarray experiments
    Downloads: 0 This Week
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  • 20
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
    Downloads: 0 This Week
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  • 21
    A visualization and design tool for RNA secondary structure
    Downloads: 0 This Week
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  • 22
    Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
    Downloads: 0 This Week
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  • 23
    A library and associated applications for searching for patterns in protein structures and measuring geometric parameters.
    Downloads: 0 This Week
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  • 24
    Cervelletto is a neural network simulator. It uses a new neural model based on biological, neurological and psychological studies. [it's not yet completed... just give me some weeks! sorry!]
    Downloads: 0 This Week
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  • 25
    The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.
    Downloads: 0 This Week
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