Showing 440 open source projects for "gnu science"

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  • 1
    This is bionically project.
    Downloads: 0 This Week
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  • 2
    Adjusting PKL-Files derived from MS-experiments. The development of the project has been MOVED TO https://github.com/binfalse/adjustpkl
    Downloads: 0 This Week
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  • 3
    An online database project with database and web interface to archive, manage, search and download individual-based life history data that have been collected from wild primate populations.
    Downloads: 0 This Week
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  • 4
    The Xholon project explores: software as systems of linked nodes, organized hierarchically. The Xholon toolkit supports this back-to-basics approach, and demonstrates practical benefits through examples from numerous domains.
    Downloads: 0 This Week
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  • 5
    JHeatChart
    JHeatChart is a simple Java library for generating heat map charts.
    Downloads: 0 This Week
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  • 6
    SAFEGUI is a graphical interface to the safe R package which performs resampling based categorical significance testing for gene expression data.
    Downloads: 0 This Week
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  • 7
    Cloe (Closure Editor) is a graphical, Java based tool used for editing contigs, resolving contig features, and closing both sequencing and physical gaps.
    Downloads: 0 This Week
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  • 8
    Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.
    Downloads: 0 This Week
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  • 9
    A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.
    Downloads: 0 This Week
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  • 10
    Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
    Downloads: 1 This Week
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  • 11
    Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .
    Downloads: 0 This Week
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  • 12
    BiVeS - Biochemical Model Versioning System BiVeS is a tool based on the XMLDiff algorithm. You can think of it as a kind of SVN for models with biological or chemical background encoded in XML.
    Downloads: 0 This Week
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  • 13
    JPS Java Protein Surface
    From a pdb file, the java program calculates the van der Walls surface of the protein in the file.
    Downloads: 0 This Week
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  • 14
    Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files
    Downloads: 0 This Week
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  • 15
    DIVAT (Diagnostic Immunohistochemistry Visualization and Analysis Tool) is designed to graphically analyse comprehensive data sets of immunohistochemical results as those used in clinical diagnostic pathology.
    Downloads: 0 This Week
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  • 16
    CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
    Downloads: 3 This Week
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  • 17
    Visualize chromatographic properties for peptides from replicate, multi-site HPLC-MRM Mass Spectrometry experiments. RT Viewer was developed to easily visualize and troubleshoot chromatographic properties of a study across multiple laboratories.
    Downloads: 0 This Week
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  • 18
    FAS-DPD
    FAS-DPD is a program to design degenerate primers for PCR.
    Downloads: 0 This Week
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  • 19
    The BioSimz project aims to deliver a library (as well as the interface) to conduct large-scale biomolecular simulations at their atomic scales of detail. The initiative idea is to observe the protein crowding in vivo; it now can do much more than that!
    Downloads: 0 This Week
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  • 20
    MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
    Downloads: 0 This Week
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  • 21
    Client tools for the FuncNet protein function analysis platform: http://funcnet.eu/
    Downloads: 0 This Week
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  • 22
    BorderFlow
    BorderFlow implements a general-purpose graph clustering algorithm. It maximizes the inner to outer flow ratio from the border of each cluster to the rest of the graph.
    Downloads: 0 This Week
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  • 23
    This project has moved to http://code.google.com/p/synthetic/
    Downloads: 0 This Week
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  • 24
    Musite
    Musite provides a bioinformatics tool for predicting both general and kinase-specific protein phosphorylation sites.
    Downloads: 1 This Week
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  • 25
    EMBOSS Suite
    EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
    Downloads: 0 This Week
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