Showing 271 open source projects for "libhamlib-4"

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  • 1
    Genome Data Visualization Toolkit (GDVTK) is a Java library for building bioinformatics visualization application. See Bioinformatics, 2004 Mar 22;20(5):727-34. Java-based application framework for visualization of gene regulatory region annotations.
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  • 2
    Submission tool for Microarray experiments
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  • 3
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
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  • 4
    SCAMPI is designed to rapidly detect molecular markers in silico through sequence comparison. For this purpose it creates a unique workflow integrating third party tools like NCBI Blast or Primer3.
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  • 5
    Cytoprophet is a Cytoscape plugin that helps researchers infer new potential protein (PPI) and domain (DDI) interactions. Users input a set of proteins and retrieve a network of plausible protein and domain interactions with a score.
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  • 6
    Reports the difference between different SNP values in terms of Transcription Binding efficiencies.
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  • 7
    MZ-Analyzer is a tool for visualization and analysing of multiple mass spectrometry data in 2D and 3D mode, including the function of quantitating the LC-peak of the specified identified peptides.
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  • 8
    This program will read in data generated by ABI DNA Analyzers using GeneScan or GeneMapper, CEQ 2000 and SCF instruments and construct gel images which are straightened and sized. Please download and view the tutorial, no documentation is included in 2.1
    Downloads: 1 This Week
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  • 9
    A library and associated applications for searching for patterns in protein structures and measuring geometric parameters.
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  • 10
    OntoDas is a web-based tool that uses information visualisation techniques to provide an intuitive, interactive environment for constructing complex queries against the Gene Ontology Database.
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  • 11
    EZMWeb is an open source web-based bioinformation integration and search system. Users can search the integrated enzyme information.It implements the analysis of correlation between different enzymes,gives its visualized results through java applet.
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  • 12
    The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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  • 13
    The WISDOM project is a Grid based production environment used to deploy bio-informatics large scale applications.
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  • 14
    Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.
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  • 15
    Venndiagram comparison for ProteinExperiments in the PRIDE Database
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  • 16
    Referent Tracking (RT) is a novel approach to store data in electronic (health) records by referring to real world entities by means of a unique ID. The RT System is a back-end that uses RDF as a representation, but adds to it a referential semantics.
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  • 17
    Geneview is a visualisation tool to display genetic sequence data stored in nucleic sequence databases like <A HREF="http://www.ncbi.nlm.nih.gov/Genbank/">GenBank</A>.
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  • 18
    MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
    Downloads: 2 This Week
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  • 19
    The ExactFDR software package is an improvement of permutation-based False Discovery Rate (FDR) estimation methods that takes advantage from exact p-value computations for analyzing Genome-wide association studies data
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  • 20
    IGBM (Identification of gene blocks in microorganisms) implements a BLAST-like method to infer conserved gene clusters among closely related prokaryotes, and provides a graphical user interface to navigate the identified clusters and their annotated info
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  • 21
    jTerm is a light-weight platform independent vocabulary/terminology server. It support multiple terminologies using an abstract model. The system is provided as a J2EE deployable application supporting a web frontend for navigation of the terminologies.
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  • 22
    Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein interactions. It strives to provide a comprehensive resource of Protein-Protein interactions for all major species.
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  • 23
    JGenAlg is a java toolbox for working with metaheuristic procedures (Genetic Algorithms, Island model, Particle Swarm, Ant Swarm). JGenAlg have a GUI, a Client/Server architecture, work with threads and can be use under distributed enviroments.
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  • 24
    WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.
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  • 25
    Genome Expression Pathway Analysis Tool - Analysis and Visualization of Microarray Gene Expression Data under Genomic, Proteomic and Metabolic Context
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