Search Results for "alpha" - Page 8
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Showing 193 open source projects for "alpha"
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A visualization software for BioPAX files. Uses compound graphs for showing complexes and compartments. Can also export to SIF and display SIF files.
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A simple tool for molecular biologists (or similar) to estimate the size of electrophoresis gel bands. This can be applied to SDS-Page-,Native-Protein-, DNA, RNA, *whatever* gels as long as a weight/size standard lane is present on the gel.
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SAAT Semi-Automated Annotation Tools The Medical University Graz, in cooperation with the Fraunhofer Institute for Biomedical Engineering IBMT is developing the SAAT - Semi-Automated Annotation Tools in the CRIP context.
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The Open Genome Analysis Platform (OGAP) provides an effectual analysis and visualization toolset for a variety of genome, proteomics, and associated data.
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EOS stands for Entity Oriented Search. The project is a toolkit to support EOS projects on a Lucene and Hadoop platform.
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This project aims to develop various tools for artificial life and complex systems simulations: from the simulator itself to generic generation tools.
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danaides
Meta data extractor based on ontologies
Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology). -
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XMAS supports a new kind of “sit forward” time series microarray analysis through visual interaction and interoperable operators. Domain knowledge is integrated directly into the system to aid users in their analysis.
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BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.
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GraphSpider is a pattern matcher which searches parsed text in phrase-structure tree or dependency graph format for syntactic structures matching a set of patterns in MPL, a regexp-like pattern language. Applications: information extraction, text mining.
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Basic life is an application that desires to simulate basic life based on some basic chemistry/physics rules. This environment provides particles that can bond, vibrate, react, etc. in order to create basic cells
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Shred is a fast and scalable faceted data browser. The application allows users to navigate the data in an intuitive way and by any path they wish to take. Immediate intuitive information regarding the data is apparent.
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The JAQPOT3 web services are OpenTox API-1.2 compliant web services. JAQPOT3 is a web application that supports model training and data preprocessing algorithms such as MLR, SVM, ANN and more.
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PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
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The Integrative Biology VRE is a web-based graphical user interface and repository that provides an environment where biological simulation experiments can be constructed without the need for any knowledge of unix, cluster computing, or shell scripting.