Search Results for "pnpm-linux" - Page 31

http://www.princeton.edu:80/pr/pwb/01/0326/1b.shtml http://www.cs.princeton.edu/immsim/ Immsim is an immune system simulation used by Immunology students and researchers. Currently it is being used at Princeton University.

Cooperative effort to develop a Java-XML API and architecture to manage and share health concepts and processes eficiently. Includes a framework to develop healthcare applications (from PDA reminders to hospital information systems) quickly and easily.

This project provides software resources for creating solid models of proteins that can be printed on color 3D printers. The main focus is a java program that reads in a PDB file and produces a PLY format stick representation of the protein.

The GeneDB project is aiming to develop and maintain a curated database resource for multiple pathogen organisms, both partially and completely sequenced.

A tool for visualizing and analysis mass spectrometric spectra and peaklists.

A suite of tools for discovering and genotyping genome structural variation from sequencing data, including the Genome STRiP algorithm.

Digital Image toolkit

A software framework to support distributed evolutionary software development. It dynamically creates a network of nodes that can run a pre-distributed source code (e.g. artificial lifeforms). The results of the calculation will be sent back to the maste

Frigg is an umbrella for all public GenomeView support tools

alinks is a set of POJO describing pedigree graphs.

EasyCluster is a simple protein sequences clustering tool.

The program fuses 2 sets of molecules. It tries different relative positions of molecules before binding them, so that there is no or minimal intersection in the resulting molecule. The atom to be fused in a molecule is labeled with an R symbol.

The SchemaWalker is a Java application able to read a any schema and produce XForms web pages for user selected nodes grouped into webpages to allow editing of XML data files.

The Cybertory™ Virtual Molecular Biology Laboratory is an on-line virtual environment for conducting simulated experiments in molecular genetics.

The Open Genome Analysis Platform (OGAP) provides an effectual analysis and visualization toolset for a variety of genome, proteomics, and associated data.

A numerical library designed for n-dimensional image-processing written in Java.

A straight-forward Java implementation of a mixture model with pluggable mixture functions, e.g. a mixture of Gaussian functions. The number and dimensionality of the mixture functions is not limited. All critical calculations are performed in log-space.

Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).

eagle-i is an ontology-driven, RDF-based distributed platform for creating, storing and searching semantically rich data. eagle-i is built around semantic web technologies and adheres to linked open data principles.

A framework for image analysis and data analysis, aimed towards microscopy and the needs of current research.

BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.

GraphSpider is a pattern matcher which searches parsed text in phrase-structure tree or dependency graph format for syntactic structures matching a set of patterns in MPL, a regexp-like pattern language. Applications: information extraction, text mining.

A biological data warehouse that locally stores and integrates biological sequences, molecular interactions, homology information, functional annotations of genes, and biological ontologies. Website: http://bioinformatics.ubc.ca/atlas