Showing 893 open source projects for "json-java"

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  • 1
    ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink. This free platform-independent program is written in Java and OpenGL Shading Language.
    Downloads: 1 This Week
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  • 2
    A bioinformatics package to analyse ESTs (Expressed Sequence Tags) easily. It contains functionalities of ESTs for EST submission, Batch BLAST and BLAST result parser, etc. easiEST contains JAVA GUI applications for analysing ESTs or other sequences
    Downloads: 0 This Week
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  • 3
    SeEvolution is the first application that lets you see the effects of mutation events on 3D models of chromosomes. It takes you on a journey through time, showing you the changes that are necessary to go from the genome of an organism to another.
    Downloads: 0 This Week
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  • 4
    NOTE: please refer to OPPL 2. OPPL is a preprocessor language that allows users to define macros for altering OWL ontologies. The syntax is very simple and intuitive, offering a very abstract and high level "scripting" language, for example for int
    Downloads: 0 This Week
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  • 5
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
    Downloads: 0 This Week
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  • 6
    Genome Data Visualization Toolkit (GDVTK) is a Java library for building bioinformatics visualization application. See Bioinformatics, 2004 Mar 22;20(5):727-34. Java-based application framework for visualization of gene regulatory region annotations.
    Downloads: 0 This Week
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  • 7
    4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.
    Downloads: 0 This Week
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  • 8
    Submission tool for Microarray experiments
    Downloads: 0 This Week
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  • 9
    The goal of this project is to make a biologic pathway simulation / emulation application. The ultimate goal is to feed different file types to the application and configure a pathway and its behaviour.
    Downloads: 0 This Week
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  • 10
    IGRAFU is an open source program to integrate solutions to rebuild phylogenetic trees. It supports various well-known algorithms, such as Maximum Parsimony and Distance-matrix methods.
    Downloads: 0 This Week
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  • 11
    prot3d is aimed to get three-dimensional folding possibilities of a peptide given its aminoacid sequence.
    Downloads: 0 This Week
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  • 12
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
    Downloads: 0 This Week
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  • 13
    A visualization and design tool for RNA secondary structure
    Downloads: 0 This Week
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  • 14
    SCAMPI is designed to rapidly detect molecular markers in silico through sequence comparison. For this purpose it creates a unique workflow integrating third party tools like NCBI Blast or Primer3.
    Downloads: 0 This Week
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  • 15
    Data and animal management software for large-scale phenotype screening Used by GNF for mouse ENU mutagenesis project. Data visualization & analysis, animal husbandry management, & automated QTL mapping. Usable as stand alone animal husbandry system.
    Downloads: 0 This Week
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  • 16
    Cytoprophet is a Cytoscape plugin that helps researchers infer new potential protein (PPI) and domain (DDI) interactions. Users input a set of proteins and retrieve a network of plausible protein and domain interactions with a score.
    Downloads: 0 This Week
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  • 17
    Agent-based multiscale model of cancer proliferation dynamics
    Downloads: 0 This Week
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  • 18
    A simple Java application for the analysis and identification of gene networks. ProPesca takes as input shorts temporal series of realtime-PCR expression levels and it clusters genes that exhibit either similar or specular behaviors.
    Downloads: 0 This Week
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  • 19
    MZ-Analyzer is a tool for visualization and analysing of multiple mass spectrometry data in 2D and 3D mode, including the function of quantitating the LC-peak of the specified identified peptides.
    Downloads: 0 This Week
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  • 20
    Reports the difference between different SNP values in terms of Transcription Binding efficiencies.
    Downloads: 0 This Week
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  • 21
    Protege is a free, open-source platform that provides a suite of tools to construct domain models and knowledge-based applications with frame-based and Semantic Web ontologies.
    Downloads: 4 This Week
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  • 22
    CAMERA is a research environment and repository for metagenomic data
    Downloads: 0 This Week
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  • 23
    Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
    Downloads: 0 This Week
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  • 24
    The Automated Life Ecosystem Simulator is a microbe simulation environment developed in Java.
    Downloads: 0 This Week
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  • 25
    The Disease Simulation Framework (DiSiF) represents a spatial simulation environment for infectious viral disease spread. The framework currently embodies a very simple framework for simulation in 2D space with focus on SARS and the Common Flu.
    Downloads: 0 This Week
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